PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_58.g218.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family NF-YC
Protein Properties Length: 283aa    MW: 30867.9 Da    PI: 4.4404
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_58.g218.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC39.41.3e-12851521784
                                NF-YC  17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 
                                          ++  lPl+ +kk++  de+vk++s +a  +++ a  +fi  l+ rs   a+ +kr+ +k sdi+aa  
  model.Picochlorum_contig_58.g218.t1  85 QRAMLPLSLVKKVICRDEEVKRVSGDAVRVIAEATGMFIGLLATRSLEYAKVQKRKNFKFSDIEAAAR 152
                                          45689**********************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011812.217160IPR009071High mobility group box domain
SMARTSM003987.0E-5194IPR009071High mobility group box domain
CDDcd013901.64E-10358No hitNo description
Gene3DG3DSA:1.10.30.107.2E-13363IPR009071High mobility group box domain
PfamPF090112.5E-11462IPR009071High mobility group box domain
SuperFamilySSF470953.53E-12463IPR009071High mobility group box domain
SuperFamilySSF471133.84E-1363153IPR009072Histone-fold
PfamPF008083.0E-988150IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.4E-1289156IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGRGPTAYFI FTGEQRPHVR EKLLAERGGD KVSVADVAKE IGARWRQLSD DEKQKYKDAA  60
AAAAAANVDP SSSKDGDKGS AKKEQRAMLP LSLVKKVICR DEEVKRVSGD AVRVIAEATG  120
MFIGLLATRS LEYAKVQKRK NFKFSDIEAA ARSDSRMKEI GLPISFEQED VFVEMKKRRV  180
DGSGGGGGGG RKRKESGGGA GKGKTLHSFF APRAAPAERE EELVEVEEEE QENEDGDIVG  240
EEDQADVLEE DQQEEEQQQE EEEQEKGGEE EEEGGEEDGG NT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176193KRRVDGSGGGGGGGRKRK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP46741111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.36e-08nuclear factor Y, subunit C3