PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

model.Picochlorum_contig_55.g202.t1

Organism

Picochlorum sp. SENEW3

Taxonomic ID

1470871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum

Family

bZIP

Protein Properties

Length: 474aa MW: 52530.3 Da PI: 6.2653

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
model.Picochlorum_contig_55.g202.t1	genome	Rutgers	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.2	1.5e-07	106	164	8	63
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka...Lkkeleelkkevaklksev 63 r + N++A++r+R+RKk++ +e e+ v+eL+a+ + L ++++l+++ ++l+s+v model.Picochlorum_contig_55.g202.t1 106 RQQAANKVAQQRYRERKKQKYAEMEKTVAELKAQLADlhaLTRRNSMLEQMNSALQSQV 164 56788****************************98651115678899999999888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.4E-4	101	175	No hit	No description
SuperFamily	SSF57959	1.2E-5	104	157	No hit	No description
CDD	cd14686	5.02E-6	106	158	No hit	No description
PROSITE pattern	PS00036	0	106	121	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MNGKGNGRHP NPSYQIGNVD LTSNTPEQLL NFPEELYNVD DFFTSYVNEL SRARQHGTPA 60 VGGDGNGRGV KRGLDQPVMV DAPTSVEAMP VDIQHEKQQG NGKSGRQQAA NKVAQQRYRE 120 RKKQKYAEME KTVAELKAQL ADLHALTRRN SMLEQMNSAL QSQVVAKETE LERLKASLDA 180 QSDASLLNSS AGNGSEEMKK NGPCGEGACG PCDVLPRDLN GIDFQTGFAD QIAALRAFMK 240 EKEITDDVEE KHLKKEDYDT LASLVGRCCQ LCQAAIRAEG VRVLDLIKGS MEEWENKGGD 300 PKWDEALDRI KVRQDQEREM LLLRDSHLVK MQEIYSEREQ LNLDAIAMML PHSSREPEKD 360 MTVKGRLTSM SRGTYLPLAR NNAELNEILE KIKQNLRREQ RAMMELNCCT ISQILTPLQA 420 ARYMTTVYPL HCDALALSNA LSRRATMNVK NSQGPGSSHS NEGAAGNCST ACC*

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MNGKGNGRHP NPSYQIGNVD LTSNTPEQLL NFPEELYNVD DFFTSYVNEL SRARQHGTPA  60
VGGDGNGRGV KRGLDQPVMV DAPTSVEAMP VDIQHEKQQG NGKSGRQQAA NKVAQQRYRE  120
RKKQKYAEME KTVAELKAQL ADLHALTRRN SMLEQMNSAL QSQVVAKETE LERLKASLDA  180
QSDASLLNSS AGNGSEEMKK NGPCGEGACG PCDVLPRDLN GIDFQTGFAD QIAALRAFMK  240
EKEITDDVEE KHLKKEDYDT LASLVGRCCQ LCQAAIRAEG VRVLDLIKGS MEEWENKGGD  300
PKWDEALDRI KVRQDQEREM LLLRDSHLVK MQEIYSEREQ LNLDAIAMML PHSSREPEKD  360
MTVKGRLTSM SRGTYLPLAR NNAELNEILE KIKQNLRREQ RAMMELNCCT ISQILTPLQA  420
ARYMTTVYPL HCDALALSNA LSRRATMNVK NSQGPGSSHS NEGAAGNCST ACC*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P6TXG4	1e-103	A0A2P6TXG4_CHLSO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP7626	2	2