PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_45.g418.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family GATA
Protein Properties Length: 404aa    MW: 43872.6 Da    PI: 9.3532
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_45.g418.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.51.1e-154777131
                                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyr 31
                                         C+ C +tkTp+WR+gp g+ktLCnaCG++  
  model.Picochlorum_contig_45.g418.t1 47 CTKCAATKTPQWREGPYGPKTLCNACGVKRT 77
                                         ***************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.6E-84190IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.1084174IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-104476No hitNo description
Gene3DG3DSA:3.30.50.103.7E-114575IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.95E-114791No hitNo description
PfamPF003204.2E-134775IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MAQVHPSMRS DPSALRRSVD ARLVVTRVVD DSEFPYHSGE INGAKCCTKC AATKTPQWRE  60
GPYGPKTLCN ACGVKRTRKL RAEQDGGKRK RSNGGQGNAK VKVVRGTSQA LEQHPVLHPT  120
EDFVKRPSHQ LQGQNSINSG KIGADAVRRP TRKAAEEAAF RTARYAKTGE WGNLNSSSPM  180
KKSMFKFDVN GNQTGSSSSD VISGPFSDVP EETAWMPHEK VVGGGSSPYT PDCAVRTSDD  240
CFAAINLMTM SAKTSLEDTF FSQPRHGTPE SSPLKMYPSN ADVEAALNKV ADLCGGVFSD  300
SNISILSQSV PPSKVSDLIK LTDELSDMQH TVSEAETEVS ALAAMLAVKQ ASLLEKQYRA  360
SMSTEKLRRF VYELETQFGL TYKVLPKIRV ACMSPTLKKT NSI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2201430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-09GATA transcription factor 16