PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_45.g234.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family B3
Protein Properties Length: 297aa    MW: 33032.7 Da    PI: 9.944
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_45.g234.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.31.3e-1347144196
                                          EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHH CS
                                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvk 70 
                                          f+k lt+sd++ +gr+v+pk  ae+h    +++ e++ l++ d  g +  vk+++  ++s+r+++ +G++   +
  model.Picochlorum_contig_45.g234.t1  47 FEKGLTQSDTSGTGRIVIPKAIAESHfpsLNDPSEGVVLRVIDVFGTTRGVKFRFwVNNSSRMYIVEGTRFLLQ 120
                                          899*************************956678999******999777777766456666678888******* PP

                                          HHT--TT-EEEEEE-SSSEE..EEEE CS
                                   B3  71 angLkegDfvvFkldgrsefelvvkv 96 
                                          a +L +gD+++F   +++e++ +v  
  model.Picochlorum_contig_45.g234.t1 121 AFKLSVGDVIMFA--KDTEGQIYVCG 144
                                          *************..56777455544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-1844145IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-1745143IPR015300DNA-binding pseudobarrel domain
CDDcd100173.01E-1446146No hitNo description
PfamPF023621.6E-1047144IPR003340B3 DNA binding domain
SMARTSM010193.4E-747148IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKREKYIVDQ LPVDPKKIMG PPEEAILPFP PEEAKERIAK MEAVVMFEKG LTQSDTSGTG  60
RIVIPKAIAE SHFPSLNDPS EGVVLRVIDV FGTTRGVKFR FWVNNSSRMY IVEGTRFLLQ  120
AFKLSVGDVI MFAKDTEGQI YVCGRKGTKD DMFRKPPSFT RKKKSKIADG SSKEGKGNGH  180
RREKTKASTS PSREQDYSKD TMEKSAPARQ KVRTLTHAET ELDGSYVYWN GQSFPPRADG  240
VFRAVSITRV RQPDQVSVQF GMWCATVTLA GEQYQAFFDS KDASVAALAT AEQSIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-214014916125B3 domain-containing transcription repressor VAL1
5yzz_C2e-214014916125B3 domain-containing transcription repressor VAL1
5z00_C2e-214014916125B3 domain-containing transcription repressor VAL1
5z00_G2e-214014916125B3 domain-containing transcription repressor VAL1
5z00_K2e-214014916125B3 domain-containing transcription repressor VAL1
5z00_M2e-214014916125B3 domain-containing transcription repressor VAL1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41131011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.12e-22HSI2-like 1