PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_43.g171.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family E2F/DP
Protein Properties Length: 369aa    MW: 39892.2 Da    PI: 4.9478
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_43.g171.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP603.7e-1965128169
                              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirw 69 
                                          r ++sL+llt+kf++l+++++ + ++ln + +e+    v  ++RRiYDi+NVLe+++++ k+ +++ir+
  model.Picochlorum_contig_43.g171.t1  65 RFDSSLKLLTKKFIELMNSTDGKGLDLNAAVREM---GV--QKRRIYDITNVLEGIGMLVKSGQSDIRY 128
                                          6789**************9999************...**..********************99999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.4E-1964128IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.89E-1365125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-2165130IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.1E-1867128IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440743.66E-8167262No hitNo description
PfamPF164211.7E-9169261IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MKNQEGTQQH QDIVEMGNGN GIVGSGGHVR RSNRSSASQY KRVGGTGGSL AGEGPRGNPV  60
GPTSRFDSSL KLLTKKFIEL MNSTDGKGLD LNAAVREMGV QKRRIYDITN VLEGIGMLVK  120
SGQSDIRYSS DIGASYHPSP VNGEGVPGGV QYRGTTVHDD YIDEGSLEYQ IECLTAMSQK  180
LRVQEEGLQE AMKELVSHDV NTMRLYVTDA DVSFLPTVHA GDQILTILAP HGTSIEVNDG  240
DDNNKVVHVS SEKDELEIYS ISGRQAQAGD ASHELQPSLS PFMRNPDLIG WSGDDIPLMP  300
PSSNGKEGGI HAAQFLLSEQ SPPRTRPGVQ ASSPERLFVD DEMDGLVDFE KGDRSQHQVI  360
DTRHSPRV*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP32581314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.39e-27E2F transcription factor 1