PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_307.g946.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family E2F/DP
Protein Properties Length: 473aa    MW: 52287.8 Da    PI: 5.461
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_307.g946.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP352.3e-1193159471
                               E2F_TDP   4 ksLrlltqkflkllek...see.givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                                           + L+ l++ fl+ + +     + g + l+++a +     v   rRR YD++NVLea++++++  k +++  g
  model.Picochlorum_contig_307.g946.t1  93 SALTRLCHDFLDKFGHvepDGRpGSLVLSHAAAHC---GV--PRRRMYDVINVLEAIKVVKRVGKLQYEFLG 159
                                           579999999999988844445678999********...99..***********************9998765 PP
2E2F_TDP277.2e-09193274469
                               E2F_TDP   4 ksLrlltqkflkllekseegivtlnevakeLvse.............dvknkrRRiYDilNVLealnliek.. 61 
                                           +sL  lt+++++ l +   g+ +l+++a  L+ +              + +  RR+YDi  +L ++++iek  
  model.Picochlorum_contig_307.g946.t1 193 NSLSNLTRRLIRTLLH-AGGTASLSDCAAYLLGPgfvpetvkknrtqRQITTERRLYDIGSILCSIGIIEKln 264
                                           79*******7777764.559***********999********99988444899******************98 PP

                               E2F_TDP  62 ..kekneirw 69 
                                             k++++++w
  model.Picochlorum_contig_307.g946.t1 265 phKRQPSFHW 274
                                           8878888888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013721.8E-890159IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-1292160IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.5E-1093159IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.06E-795160IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.8E-9190274IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.7E-6190276IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.3E-10193274IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MDRSFGGGDN TEREASTQET TGVGFPKTQE RSQSDREKDA VHVALEQAPF QEDEDAVSKH  60
EQIAGGSGEV REHEEVVVTA QDLGLLPKRE PKSALTRLCH DFLDKFGHVE PDGRPGSLVL  120
SHAAAHCGVP RRRMYDVINV LEAIKVVKRV GKLQYEFLGY DGLPDVITEI MSETDPLHNP  180
DINVSDAQMK DLNSLSNLTR RLIRTLLHAG GTASLSDCAA YLLGPGFVPE TVKKNRTQRQ  240
ITTERRLYDI GSILCSIGII EKLNPHKRQP SFHWTYGWKP GDAHQPPELA VAKQAREPRP  300
ILEKLSEEDV LETSSSKRKK PAEAKSPEKS ARMHTPTQQP QFSGMMPPGF NLEAADAEKF  360
SNLMYNPALF NSMSMPMGML PNTMPHSAEP IDPVQLDPSA LAAFIAAQQN IDFSSHQSPG  420
IPNDVAHGDF MMQFLPYMQQ LISGTLDPSP APEQRGKETD EQQPDYRTQD PS*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41861012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.11e-16DP-E2F-like protein 3