PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_3.g4.t3
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family MYB
Protein Properties Length: 395aa    MW: 44535.5 Da    PI: 10.0375
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_3.g4.t3genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85.1e-13188230146
                                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                       +g+WT+eEd  l   v+ lG++ W++Ia+ ++  Rt++ c+ rw+ 
  model.Picochlorum_contig_3.g4.t3 188 KGAWTEEEDASLRAMVESLGTK-WTKIAAAIQ--RTPEACRFRWRE 230
                                       79********************.********9..**********96 PP
2Myb_DNA-binding40.28.1e-13240304245
                                       SSS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HHHHHHHHH CS
                   Myb_DNA-binding   2 grWTteEdellvdavkqlGgg......................tWktIartmgkgRtlkqcksrwq 45 
                                       g WT++E+ +l +av+++G++                      +W+++ ++m  +R++ qc+ +w+
  model.Picochlorum_contig_3.g4.t3 240 GLWTKDEEARLTEAVEKFGKPvkapagdgdngpsdrrilldniNWEAVVAHMK-TRSRVQCITKWY 304
                                       67**************************************************9.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.797106170IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.7E-4106174IPR009057Homeodomain-like
SMARTSM007173110184IPR001005SANT/Myb domain
SuperFamilySSF466892.18E-13162231IPR009057Homeodomain-like
PROSITE profilePS5129417.008183236IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-12184230IPR009057Homeodomain-like
SMARTSM007174.4E-10187234IPR001005SANT/Myb domain
CDDcd001671.25E-7190231No hitNo description
PfamPF139213.0E-13191250No hitNo description
PROSITE profilePS500907.747234303IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-9237293IPR009057Homeodomain-like
SMARTSM007178.2E-11238309IPR001005SANT/Myb domain
CDDcd001676.11E-7242304No hitNo description
SuperFamilySSF466891.05E-10287368IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-5294358IPR009057Homeodomain-like
PROSITE profilePS500906.992309358IPR017877Myb-like domain
SMARTSM007172.3313364IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGTGRISSEF FVFCSGHVGG FVIKDDRVSR TERPTSHKRK REEIDVTVEG VKDAGEAHPV  60
ASRQPKTDTQ VDTQATADQG GRNASDATPE LYDKRPDQTW KEDLKRTRVK SGLYSKSEEN  120
TLREAVRQFA IDRNLPLDDF SWVISTGNKH RSADTKGIWT IVAKSLPQRT IKSVAAAGVR  180
LFHPYAIKGA WTEEEDASLR AMVESLGTKW TKIAAAIQRT PEACRFRWRE IRLGASKNTG  240
LWTKDEEARL TEAVEKFGKP VKAPAGDGDN GPSDRRILLD NINWEAVVAH MKTRSRVQCI  300
TKWYLRQGPT MMDRGDWGPG DDKKLLSALW KCGKEIDCDV PWDSLVSGRT ASQCKRRWAI  360
MKKRVKNSKD YEFGQLVQKL VELYLPNLLK EQSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5eyb_A4e-1411230397272DNA-binding protein reb1
5eyb_B4e-1411230397272DNA-binding protein reb1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP23271315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.12e-25MYB_related family protein