PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_3.g4.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family MYB
Protein Properties Length: 415aa    MW: 46980.7 Da    PI: 10.3929
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_3.g4.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.5e-13208250146
                                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                       +g+WT+eEd  l   v+ lG++ W++Ia+ ++  Rt++ c+ rw+ 
  model.Picochlorum_contig_3.g4.t1 208 KGAWTEEEDASLRAMVESLGTK-WTKIAAAIQ--RTPEACRFRWRE 250
                                       79********************.********9..**********96 PP
2Myb_DNA-binding40.18.7e-13260324245
                                       SSS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HHHHHHHHH CS
                   Myb_DNA-binding   2 grWTteEdellvdavkqlGgg......................tWktIartmgkgRtlkqcksrwq 45 
                                       g WT++E+ +l +av+++G++                      +W+++ ++m  +R++ qc+ +w+
  model.Picochlorum_contig_3.g4.t1 260 GLWTKDEEARLTEAVEKFGKPvkapagdgdngpsdrrilldniNWEAVVAHMK-TRSRVQCITKWY 324
                                       67**************************************************9.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.797126190IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.0E-4126194IPR009057Homeodomain-like
SMARTSM007173130204IPR001005SANT/Myb domain
SuperFamilySSF466892.34E-13182251IPR009057Homeodomain-like
PROSITE profilePS5129417.008203256IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-12204250IPR009057Homeodomain-like
SMARTSM007174.4E-10207254IPR001005SANT/Myb domain
CDDcd001672.12E-7210251No hitNo description
PfamPF139213.2E-13211270No hitNo description
PROSITE profilePS500907.747254323IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.6E-9257313IPR009057Homeodomain-like
SMARTSM007178.2E-11258329IPR001005SANT/Myb domain
CDDcd001671.03E-6262324No hitNo description
SuperFamilySSF466891.11E-10307388IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-5314378IPR009057Homeodomain-like
PROSITE profilePS500906.992329378IPR017877Myb-like domain
SMARTSM007172.3333384IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MKCRKVLKRA VRLMRKTDSR PKKMLHAELE SALTSGHVGG FVIKDDRVSR TERPTSHKRK  60
REEIDVTVEG VKDAGEAHPV ASRQPKTDTQ VDTQATADQG GRNASDATPE LYDKRPDQTW  120
KEDLKRTRVK SGLYSKSEEN TLREAVRQFA IDRNLPLDDF SWVISTGNKH RSADTKGIWT  180
IVAKSLPQRT IKSVAAAGVR LFHPYAIKGA WTEEEDASLR AMVESLGTKW TKIAAAIQRT  240
PEACRFRWRE IRLGASKNTG LWTKDEEARL TEAVEKFGKP VKAPAGDGDN GPSDRRILLD  300
NINWEAVVAH MKTRSRVQCI TKWYLRQGPT MMDRGDWGPG DDKKLLSALW KCGKEIDCDV  360
PWDSLVSGRT ASQCKRRWAI MKKRVKNSKD YEFGQLVQKL VELYLPNLLK EQSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5eyb_A4e-1413232397272DNA-binding protein reb1
5eyb_B4e-1413232397272DNA-binding protein reb1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP23271315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.15e-25MYB_related family protein