PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_27.g81.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | Nin-like | ||||||||
Protein Properties | Length: 239aa MW: 26513.2 Da PI: 10.1059 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 45.6 | 1.4e-14 | 103 | 145 | 4 | 46 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 +i+le++ +y +lp +A+k Lg++lT Kr CR GI+ WP+ model.Picochlorum_contig_27.g81.t1 103 DITLEEVLQYVHLPSSEASKRLGLGLTSFKRVCRSVGIMSWPY 145 79****************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 14.948 | 87 | 173 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.3E-13 | 104 | 146 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MSKGTSSDHT GDTNEFCGHG NGYRGVISLL EVLKNLDHQA IIPTGTNLGA PGPSKGQPPS 60 FARRPLNLPK RDQGAQTGQV TRRVRLNRSG FRKRTREGRY LSDITLEEVL QYVHLPSSEA 120 SKRLGLGLTS FKRVCRSVGI MSWPYKAGKQ PSREELITMA LESGSKQSRE RAEDPAVLTQ 180 GAEASLRQLI AFCTGDFREF LIFKLRQFLE TSYTMRYDCG FTIFNDPILL ALVTKLSE* |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP84 | 16 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 2e-08 | RWP-RK domain-containing protein |