PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_27.g80.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family ERF
Protein Properties Length: 594aa    MW: 65338.6 Da    PI: 7.4284
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_27.g80.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.56.9e-0856103154
                                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                                         +++kGV wdkk +rW+A+++        ++ ++g++    +Aaka ++a ++++
  model.Picochlorum_contig_27.g80.t1  56 TRFKGVQWDKKGKRWRARLHT------DRTRHVGYYSDDVQAAKAWDQAFLRYN 103
                                         589***************777......5999*******99********998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.63957115IPR001471AP2/ERF domain
SMARTSM003800.06557121IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-757115IPR016177DNA-binding domain
PROSITE profilePS5103210.81136191IPR001471AP2/ERF domain
SMARTSM003808.8E-5136197IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-9137192IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-9138191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MEPNGAESTA GQTVPEAVEP NRSFRRDARP HDRVGQNCDG ILEKQDQVGD CEGPITRFKG  60
VQWDKKGKRW RARLHTDRTR HVGYYSDDVQ AAKAWDQAFL RYNSESSVVD KLNFPEESYA  120
AFKKFISTTG DVDLCDLRGV TSVTHGQFRS VILQNRVQKT IGTFSTARQA AVAYDWKAIS  180
LQGWGALTNF PIKSYQMEYV RNGGISPLDR TVLPPLPNLS NTTPSGIQQS LMLQMQNPMY  240
PGGMPPDALQ QVLHQSPDPM ASPEYQEHIR QLCTILSIPP EHLVANVKSQ VPEKKATQES  300
VAPVQRTLVS QVADNQWRAS ITVDLGVFPS KEKAEIACKR SRLIADGFGS ATDPSNILEH  360
FEAIKSRRNE KVNSINEKDG SYYAKLRIKQ RAFELGPYAT FEEAAVAYDK YKLVIDGMVA  420
DTFNSLVHIL LPEDDATMLL EALNVKPTTI SKQQQVPVQT PAAGMTYTHP TLLRVGSMSN  480
IVAPLPVSGV SIPRVGSQTS LQEGAIELQK QLEEIESSIE GIHGHKRTKI GGQGTPEPQQ  540
HTDSATPSMR TDSQNHASMA AGQLSNPPIA VDNKGGSFPL PAYPKRSNNN AQD*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP574088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.15e-10AP2 family protein