PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_223.g587.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 27022.5 Da PI: 10.25 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.2 | 3.1e-11 | 132 | 175 | 1 | 49 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 s+++GV++ +++rW+A+ +++ng k slg f+++e Aa+a++++ model.Picochlorum_contig_223.g587.t1 132 SRFRGVHRTVSTKRWEAQ---FRKNG--KPTSLGCFDSEESAARAYDKM 175 789***************...88887..*******************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.92E-9 | 132 | 177 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.7E-8 | 132 | 175 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.495 | 133 | 195 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-4 | 133 | 201 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-7 | 133 | 177 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MDVAGSNLSV SSKAEENQHP TVDIHNFLED RLQKCLEKDI FALPLAYVRS ENPLVSQMKI 60 QDVQNRIQEH RHEVPSWDTW ESEKSRRESV TAHSVFAKLR PIESLSPRKV EPGLESPRLG 120 KTKSTSKRPF TSRFRGVHRT VSTKRWEAQF RKNGKPTSLG CFDSEESAAR AYDKMILWSE 180 LHGKAGAKPS VMNFDPEQYK QIAPWLQRIS QDGLLQALRR EGREEAARRT NDNKK* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011402302.1 | 1e-44 | AP2-like ethylene-responsive transcription factor SNZ | ||||
TrEMBL | A0A087SU45 | 3e-43 | A0A087SU45_AUXPR; AP2-like ethylene-responsive transcription factor SNZ | ||||
STRING | A0A087SU45 | 5e-44 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2746 | 14 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 2e-07 | AP2 family protein |