PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

model.Picochlorum_contig_197.g870.t1

Organism

Picochlorum sp. SENEW3

Taxonomic ID

1470871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum

Family

bZIP

Protein Properties

Length: 543aa MW: 60188.5 Da PI: 5.1376

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
model.Picochlorum_contig_197.g870.t1	genome	Rutgers	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.5	9.1e-11	460	507	3	50
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 elk+ rk+kNR++A sR + e++ Le kvk+Leae + L + l+ model.Picochlorum_contig_197.g870.t1 460 ELKKLVRKEKNRISAAFSRYKMTYEMKLLESKVKKLEAEKTNLSEWLQ 507 89***************************************9997665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.6E-9	454	506	No hit	No description
SMART	SM00338	0.0021	458	521	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.9E-8	460	508	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.6E-6	461	507	No hit	No description
CDD	cd14686	1.18E-4	463	507	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MVDPENNFMH KEGARQLSLD SQQFLQHVMS VDGDELYQLL VSEQHGASQS PSKLADSLLK 60 VKDPEEFERK TSDGAMLADM MHSLMDEQQQ HGHGEPILFS EKTVNMIFGE QLREIAEEVA 120 ADMQQDGSHQ NEHETHQQQA HLVPGAAETM VHQRPIQDPL QQRSTGSFIQ EWSEVKAGDA 180 KKEQQYLTLL DGNVLQREDG TAVIATLPEG QAQLTVPIPG SSSMLQYIPI LDSTVVPQQT 240 GDIIVQRQQV VQTPSPFDQK TQNLLSPSQT EQLVADAAKQ RCQLQQQDTG KVLPKPQLRP 300 VDSDGGNAQE TEASEDVTVS RQVSHKRERS LTTSSIMVSE SLRAPESKQS LGGGYQDGTP 360 HDISPNSSLN PLANTPREED CCPPLKPMKL FSDGLEIDEE MSQIIDATLC TPAGGKRRGR 420 PPGRSKSNNS IPGFVEPSDT EILANILLDN PELRKSSTDE LKKLVRKEKN RISAAFSRYK 480 MTYEMKLLES KVKKLEAEKT NLSEWLQTTP EVQPHRILLA DGHTAPLRKD PGKKPPVRHL 540 SL*

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MVDPENNFMH KEGARQLSLD SQQFLQHVMS VDGDELYQLL VSEQHGASQS PSKLADSLLK  60
VKDPEEFERK TSDGAMLADM MHSLMDEQQQ HGHGEPILFS EKTVNMIFGE QLREIAEEVA  120
ADMQQDGSHQ NEHETHQQQA HLVPGAAETM VHQRPIQDPL QQRSTGSFIQ EWSEVKAGDA  180
KKEQQYLTLL DGNVLQREDG TAVIATLPEG QAQLTVPIPG SSSMLQYIPI LDSTVVPQQT  240
GDIIVQRQQV VQTPSPFDQK TQNLLSPSQT EQLVADAAKQ RCQLQQQDTG KVLPKPQLRP  300
VDSDGGNAQE TEASEDVTVS RQVSHKRERS LTTSSIMVSE SLRAPESKQS LGGGYQDGTP  360
HDISPNSSLN PLANTPREED CCPPLKPMKL FSDGLEIDEE MSQIIDATLC TPAGGKRRGR  420
PPGRSKSNNS IPGFVEPSDT EILANILLDN PELRKSSTDE LKKLVRKEKN RISAAFSRYK  480
MTYEMKLLES KVKKLEAEKT NLSEWLQTTP EVQPHRILLA DGHTAPLRKD PGKKPPVRHL  540
SL*