PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_175.g551.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family MYB
Protein Properties Length: 359aa    MW: 39696.5 Da    PI: 8.5816
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_175.g551.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.4e-181055147
                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                          +g+WT+eEd+ll +++ q+G+++W+ Ia  ++ gR++k+c++rw + 
  model.Picochlorum_contig_175.g551.t1 10 KGAWTAEEDDLLRRLIMQHGPKNWSVIAGGIP-GRSGKSCRLRWCNQ 55
                                          79******************************.***********985 PP
2Myb_DNA-binding47.83.4e-1562106147
                                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                           + +++++Ed   + a++ +G++ W+ Ia+ ++ gRt++ +k++w++ 
  model.Picochlorum_contig_175.g551.t1  62 KEPFSEWEDAVVIYAHRAHGNK-WAVIAKLLP-GRTDNAVKNHWNST 106
                                           579*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.239560IPR017930Myb domain
SuperFamilySSF466895.99E-298103IPR009057Homeodomain-like
SMARTSM007172.9E-17958IPR001005SANT/Myb domain
PfamPF002491.1E-171055IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-231162IPR009057Homeodomain-like
CDDcd001673.47E-151254No hitNo description
PROSITE profilePS5129418.96461111IPR017930Myb domain
SMARTSM007171.9E-1461109IPR001005SANT/Myb domain
PfamPF002494.9E-1362106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2263110IPR009057Homeodomain-like
CDDcd001671.40E-1064107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSQPLDDFKK GAWTAEEDDL LRRLIMQHGP KNWSVIAGGI PGRSGKSCRL RWCNQLNPEV  60
KKEPFSEWED AVVIYAHRAH GNKWAVIAKL LPGRTDNAVK NHWNSTLKRK YATEQLDNKY  120
VSGNYTLEWL LENPPKESSR HRAVSQANQE LHMPLQQSNR APLSGQHAAR APLLPLEQHR  180
KPLDDETKLP SGIAKVSVDA AVGMLKSLPP LAQSALLEAS LLAAPAFKYS CNSARHLDSA  240
PDRMMQKKQS DIAKNASRVV FKPQSAGPCL VPVQAQQNAA EEFAESHRGA IDMMDKMAAD  300
ITAGYAFILV HVRVIPLSTN VFNQCTCPVA DLLILTPTEK DSEIHELKTL VMLALEIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-38101104104C-Myb DNA-Binding Domain
1msf_C1e-38101104104C-Myb DNA-Binding Domain
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00653PBMTransfer from LOC_Os02g09480Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P6VEF02e-71A0A2P6VEF0_9CHLO; Myb-related B-like isoform B
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-49myb domain protein 109