PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_169.g540.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family bZIP
Protein Properties Length: 293aa    MW: 32511.2 Da    PI: 5.7049
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_169.g540.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.92.8e-10178229657
                                           HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                bZIP_1   6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                                           +er k + Re+A rsRq++ a+i++Le++ ++L+ eN++L++ l++ k ++a
  model.Picochlorum_contig_169.g540.t1 178 VERVKRRRRESAHRSRQKRFAYIQNLETENQALKMENERLRQMLSSSKTTAA 229
                                           56667777*********************************99999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS502178.68175222IPR004827Basic-leucine zipper domain
PfamPF001701.7E-7177227IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.1E-7179226No hitNo description
SuperFamilySSF579591.34E-5180223No hitNo description
CDDcd146864.78E-6188225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MCRVAVRQAS ARAHRQAEQE NAIRSSNESV QGNGGHEYFD VDALLGELDQ SSADADFAFM  60
QYLNSGIVPQ ATVPQEQQLN VVQGQPVGYT SQQTGSYVQP MMMMPTQPSA DYVDHHSMNN  120
NYLGGYQMHQ QQIMSPGMQQ DSVNGASDDG AKDMKEKPAK RARGKKTKKT PEEIAEQVER  180
VKRRRRESAH RSRQKRFAYI QNLETENQAL KMENERLRQM LSSSKTTAAP KDDGSVDSLE  240
SMENKKEDMY VKSELAGSSS ALIDSTFNDI MCKATSQEIA MAADLLGIKA ED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190195RSRQKR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP690344