PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_163.g722.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | C2H2 | ||||||||
Protein Properties | Length: 230aa MW: 24457.1 Da PI: 10.5213 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.5 | 5e-05 | 15 | 36 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C +C++ F++ +L +H+++ H model.Picochlorum_contig_163.g722.t1 15 CFYCDREFNQEADLFTHQKSkH 36 99*****************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 9.9 | 13 | 36 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 15 | 36 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 37 | 60 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 39 | 60 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MVRKRKKVEV VKPWCFYCDR EFNQEADLFT HQKSKHFKCP NCTKRLGSAR ALSIHCLQVH 60 KTGIQEIPEA KEGRKDPKWE IVGSVGIPPG MVRGGPVPPR GGGPLPASHT HVGSGPTAAV 120 RPRLAYPPYP SGGGVMMPPP PVYGGVPPPP YYGAPPLHPP PPASSSLHGR PPVPPPPGGG 180 GGGHPPRPPP PAAAMPSSSQ QQRQQPTQYV SAPAHIHRKP TRAKQDDDT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 6 | RKRKK |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4135 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30970.1 | 2e-21 | C2H2 family protein |