PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_16.g24.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | E2F/DP | ||||||||
Protein Properties | Length: 344aa MW: 37847.9 Da PI: 5.0355 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 65.8 | 5.8e-21 | 125 | 206 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse..............dvknkrRRiYDilNVLealnliek 61 ++++L+++t + l+e e+ + vt+ne+a++Lv+e ++kn rRR+YD+lNVL a+++++k model.Picochlorum_contig_16.g24.t1 125 SQTGLKHFTVR---LCEIIETrRCVTYNEIADALVEElqqeyqagvldvppEEKNVRRRVYDALNVLDAIGVVHK 196 589********...99998888*****************************999********************* PP E2F_TDP 62 kekneirwkg 71 ++ ++irw g model.Picochlorum_contig_16.g24.t1 197 ESSKSIRWVG 206 ********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.7E-26 | 122 | 211 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 5.4E-21 | 124 | 206 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.6E-18 | 126 | 206 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.49E-16 | 127 | 207 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF08781 | 3.2E-10 | 222 | 332 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 1.12E-10 | 222 | 332 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MEHTSCAGGG LTDAIRNNQE GGTFQVTMQF QDKTALPIGL DTELVQRVYD QFGITESRLA 60 DGDASVSKGL ELASKVYDDV PKVQSELEVV KGFRGQDGPR DGSMGEDVAA KPSTSPTAAA 120 AGAASQTGLK HFTVRLCEII ETRRCVTYNE IADALVEELQ QEYQAGVLDV PPEEKNVRRR 180 VYDALNVLDA IGVVHKESSK SIRWVGWPTE RNDKRIAARS NLERLRLKRD ELVEQVQGQL 240 TSTAESATKL FCLSNLILRN QDAPLPLLLV AQEKGIQTPN PFTVPFMMIK APSHAKTDVH 300 LSEDCHRASL DFHDAFFQIF DDMGVMRMMG LDKPCPNLFS SPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 9e-19 | 122 | 209 | 5 | 91 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1599 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02470.3 | 9e-30 | Transcription factor DP |