PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_16.g24.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family E2F/DP
Protein Properties Length: 344aa    MW: 37847.9 Da    PI: 5.0355
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_16.g24.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP65.85.8e-21125206271
                             E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse..............dvknkrRRiYDilNVLealnliek 61 
                                         ++++L+++t +   l+e  e+ + vt+ne+a++Lv+e              ++kn rRR+YD+lNVL a+++++k
  model.Picochlorum_contig_16.g24.t1 125 SQTGLKHFTVR---LCEIIETrRCVTYNEIADALVEElqqeyqagvldvppEEKNVRRRVYDALNVLDAIGVVHK 196
                                         589********...99998888*****************************999********************* PP

                             E2F_TDP  62 kekneirwkg 71 
                                         ++ ++irw g
  model.Picochlorum_contig_16.g24.t1 197 ESSKSIRWVG 206
                                         ********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-26122211IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.4E-21124206IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.6E-18126206IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.49E-16127207IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF087813.2E-10222332IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.12E-10222332No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEHTSCAGGG LTDAIRNNQE GGTFQVTMQF QDKTALPIGL DTELVQRVYD QFGITESRLA  60
DGDASVSKGL ELASKVYDDV PKVQSELEVV KGFRGQDGPR DGSMGEDVAA KPSTSPTAAA  120
AGAASQTGLK HFTVRLCEII ETRRCVTYNE IADALVEELQ QEYQAGVLDV PPEEKNVRRR  180
VYDALNVLDA IGVVHKESSK SIRWVGWPTE RNDKRIAARS NLERLRLKRD ELVEQVQGQL  240
TSTAESATKL FCLSNLILRN QDAPLPLLLV AQEKGIQTPN PFTVPFMMIK APSHAKTDVH  300
LSEDCHRASL DFHDAFFQIF DDMGVMRMMG LDKPCPNLFS SPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B9e-19122209591PROTEIN (TRANSCRIPTION FACTOR DP-2)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP15991417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.39e-30Transcription factor DP