PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_16.g153.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | bZIP | ||||||||
Protein Properties | Length: 245aa MW: 27100.5 Da PI: 6.8107 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 54.3 | 2.9e-17 | 175 | 236 | 1 | 62 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ek++k+ rrkq+NRe+ArrsR+RK+ae+e+L+++ +L+ae ++L+ke elk ++ l+s+ model.Picochlorum_contig_16.g153.t1 175 EKDIKKLRRKQSNRESARRSRLRKQAECEHLQNENFTLKAEVDRLRKEQIELKTTITVLQSQ 236 899***************************************************99988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.2E-13 | 173 | 240 | No hit | No description |
SMART | SM00338 | 1.7E-13 | 175 | 239 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.0E-14 | 175 | 236 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.013 | 177 | 240 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.19E-10 | 178 | 237 | No hit | No description |
CDD | cd14702 | 9.07E-15 | 180 | 237 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 182 | 197 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0090342 | Biological Process | regulation of cell aging | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDGEGPRNAV EIPDVAQASD EMRKHWEQIQ ENMLKSFPNT LPFGNGAMAA PFPMPPALMP 60 LAMMQMSNLA SLYSSGLVGG EVPSVEQKTQ TENATNNNDK TLSGLNLLAS TVGQPTTNNN 120 FPGINSPLVS EKYSGDAKTG KSDSQQAKRS RSLSLTQDQD AEIYLDEATI AGMDEKDIKK 180 LRRKQSNRES ARRSRLRKQA ECEHLQNENF TLKAEVDRLR KEQIELKTTI TVLQSQLLEL 240 RKHA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 179 | 184 | KLRRKQ |
2 | 191 | 197 | RRSRLRK |
3 | 191 | 198 | RRSRLRKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00039 | PBM | Transfer from AT4G36730 | Download |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4426 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.1 | 1e-16 | G-box binding factor 1 |