PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_16.g147.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family C2H2
Protein Properties Length: 401aa    MW: 46573.1 Da    PI: 7.5639
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_16.g147.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-05370393223
                                          EETTTTEEESSHHHHHHHHHH..T CS
                              zf-C2H2   2 kCpdCgksFsrksnLkrHirt..H 23 
                                          +C  C++sF+++ +L +Hi++  H
  model.Picochlorum_contig_16.g147.t1 370 SCATCKQSFPSRNQLFKHIKKegH 393
                                          7******************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002717.0E-21163IPR001623DnaJ domain
SuperFamilySSF465656.41E-22283IPR001623DnaJ domain
CDDcd062576.48E-17260IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1105.5E-24283IPR001623DnaJ domain
PROSITE profilePS5007619.475271IPR001623DnaJ domain
PfamPF002261.9E-22368IPR001623DnaJ domain
PRINTSPR006252.1E-15422IPR001623DnaJ domain
PRINTSPR006252.1E-152237IPR001623DnaJ domain
PRINTSPR006252.1E-154363IPR001623DnaJ domain
PROSITE patternPS0063604867IPR018253DnaJ domain, conserved site
SuperFamilySSF576671.19E-12252304No hitNo description
SMARTSM004515.4E-7262296IPR003604Zinc finger, U1-type
PROSITE profilePS501578.85265294IPR007087Zinc finger, C2H2
SMARTSM003550.061265289IPR015880Zinc finger, C2H2-like
PfamPF121711.9E-7267289IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280267289IPR007087Zinc finger, C2H2
PROSITE profilePS501579.078369398IPR007087Zinc finger, C2H2
SMARTSM003550.26369393IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280371393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MTLYDVLELE ATASAEDVRR AYRKLALKWH PDKQIQESGD ENFAADKFRE IQNAYEILTD  60
EKERNSYDAR LRRLQKKTGS TNQICAPPET FTEVADLLFD REYMEFPTNI GAYGDLFLKI  120
ASLEKTHYPD FFLNGDEPIQ TFYAEWGSFA TSLDFEWVQQ PIDPRLDRRI RRAIEQENVK  180
TRKTARREYN EQVRLFAEFV KKRDSRYKEY QSMLLEKKRQ QEEQAAAAAA AAAELKIQRR  240
EMNLNLPISD DDQESEEDIF EQQLWHCPAC EKFFKSEGAF TNHEKSKKHN KNVEILRQTL  300
LLEEEDDDFG DFENLTISSS SSSSSRSSSS SSPSSPAKGA NHKEPPARQR QRRRRRALGK  360
KKKEPESPLS CATCKQSFPS RNQLFKHIKK EGHATFKVLK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ctw_A2e-152681880DnaJ homolog subfamily C member 5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP443077
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.18e-25DNAJ heat shock N-terminal domain-containing protein