PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_16.g127.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | GATA | ||||||||
Protein Properties | Length: 279aa MW: 30803.3 Da PI: 9.8751 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 30.3 | 5.8e-10 | 174 | 203 | 3 | 31 |
GATA 3 nCgttk.TplWRrgpdgnktLCnaCGlyyr 31 +C + +p+WRrgp + LCnaCG ++ model.Picochlorum_contig_16.g127.t1 174 HCLNPNeSPQWRRGPPEAPILCNACGTRWL 203 5544445********77777********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.7E-4 | 166 | 224 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.99E-6 | 178 | 213 | No hit | No description |
Pfam | PF00320 | 1.6E-7 | 179 | 202 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 5.4E-7 | 179 | 207 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.51E-7 | 180 | 202 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MVRTIVSGVV HEIRSAADRG VTLTCLQPTF GTEDEPGVSV PKNGGDERTS GADMRRIHKN 60 DGHSTSSRSR SASPGKRKSI AQDGYDDGFP SYEDGLSPED GLSVLLRACE ILGNSSNDQN 120 TRQENTVHSG AHDADTSPRK QVKSPAQSPQ KASRNASPTR SRHEKPHGPC TNKHCLNPNE 180 SPQWRRGPPE APILCNACGT RWLRSKQLIP IMVRQLLHSC IYVHRGDLVF LYFTNAASAW 240 YSIRQIWGKE SKESSCLSCE KGRTSPRWNR NTKTRTTR* |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP450 | 15 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.1 | 6e-09 | GATA transcription factor 26 |