PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_152.g812.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family GATA
Protein Properties Length: 501aa    MW: 53662.3 Da    PI: 4.886
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_152.g812.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.35.7e-15463494132
                                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                                           C++C +t+Tp WR gp g+ktLCnaCG+++ k
  model.Picochlorum_contig_152.g812.t1 463 CTQCTATTTPVWRAGPFGHKTLCNACGVRWMK 494
                                           ******************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.19E-12455496No hitNo description
PROSITE profilePS5011412.11457490IPR000679Zinc finger, GATA-type
SMARTSM004013.9E-5457500IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.9E-13462494IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.29E-9462492No hitNo description
PROSITE patternPS003440463488IPR000679Zinc finger, GATA-type
PfamPF003202.3E-12463494IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MPFEAAPLST CDVDSLPILM PQHSMGCGSS VPPLGDDLYA ALNDASLTDV MESDVSQMQD  60
LLPLQPYGSV GLLEIADEFE GINGPGQGSI ERGTCSTAGP LVHDGKFDEP QMDLGASDCA  120
WNDPGAMDAF GMGPSSRMNN SSVLIRSSND FENGGNENVH PMVPVQTQKP WMDSEEGDDS  180
LRMLPKTPMA GTAHPLGENW DMLVQSTKDG SDDDGSALDD TAKKSKSLRG MRHVPLAVAL  240
LNLQCLQAGA ALCYQASWQG CPSGAWCSMS PGHFGMCDTS AVVPGPGAYL PEELEALGIR  300
TEDGSWMDIP LPEAAATLAE SVKGKSLEEA RVAPVETSQG ANKPAVRQST RRRMRRKVDD  360
DDGYDFGSSD DDSVNPTGPE SMEIRQSSRL SRASSKKQIA PVTTRSKRAS AQRSYVNIAA  420
QQQKNRRGGR VPSRRAPQVW IKGEVRDPRT GMMISDVPPG VFCTQCTATT TPVWRAGPFG  480
HKTLCNACGV RWMKVDPKKK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1346355RQSTRRRMRR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP43691012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28340.11e-09GATA transcription factor 13