PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_15.g4.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family SBP
Protein Properties Length: 977aa    MW: 108158 Da    PI: 6.8924
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_15.g4.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP92.15.9e-2940115276
                                        -SSTT-----TT-.-HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                                SBP   2 CqvegCeadlsea.keyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                                        Cq++gC+++l  + k+y+ r++vC  h ka   +v g+++rfCqqC++fh+lsefD +k+sC  rL+khn rr++ 
  model.Picochlorum_contig_15.g4.t1  40 CQADGCHVNLVGLkKKYYTRYRVCPDHQKARCSIVGGEKKRFCQQCGKFHALSEFDGNKKSCIARLEKHNVRRKRL 115
                                        **********998468*********************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-2337101IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.88937115IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.26E-2438115IPR004333Transcription factor, SBP-box
PfamPF031104.5E-2540114IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.205.4E-5619731IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.71E-7623731IPR020683Ankyrin repeat-containing domain
CDDcd002041.19E-5624732No hitNo description
PROSITE profilePS502979.357625735IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 977 aa     Download sequence    Send to blast
MGDSWKQEDW VLHRFSTVAE PREGGGKDSS STVDQVNVEC QADGCHVNLV GLKKKYYTRY  60
RVCPDHQKAR CSIVGGEKKR FCQQCGKFHA LSEFDGNKKS CIARLEKHNV RRKRLREIQH  120
MLKSRGYIDR DALRQKYNIS DKKLAAMEAK AKAKLGMMRK GGNSLDSVLH SSKESDVSTS  180
TDEKDSQSRK SDSVKGYVPT TDQSSCAEIS SPESMLPVNA DLDLLQDSYL DPVVSSVEQQ  240
SDMHADILYL SDERNSWDLD ELCGPTRRES QPNSTFNNDI MSVGAGGKVL PGCADFCQEI  300
LRSVDNPLSH PEWDQELFSV ACKLDKVTPA DLTPGVASGL EGLCDAHAVE GYMRPGCVYL  360
QADAIVEKHK YSTCMDVREK AEKFLRSTAR ADGAPITKNA ILQIDEHLVY TDGNNIRQIF  420
SLRNAGNLLP ALTSVSSLAI VAQREPVEII VESERVRSSD NVFVRSRGEH LETQLMSIET  480
HDKSQSLFIS VFGCVKPGVL QVELNRGPYT TAAQLVVLCT NAEEADEVKM LGVGRNACLR  540
TILYRIGMIM EAKDKLAGGM SHEDVAREYK RAPKSPSESA RALIPLLIQR KMHHLLESAL  600
EAYLCSNRDK QVLMSSIEES CMESTGMTLL QHAVKSQSVE VLQCILSWGQ RYGLSLECCR  660
EGRGKTTALH LAVMVKDKGH AAELLTQYCV DAIDGWEGAK SIDGTSPIAL ATLVGNAEEI  720
EGRISVGAEK NELLSAQEKD TLCKKTWYRV SGSKTTISGQ EQDSEGKEMG VFLEYSSQYL  780
EEQYKVWFNR RRVTIDLSVL AMTMFSQGLA LYTGEYSTSM LAWIAAIILL LYSTAVVGSS  840
FWSQEMYTNH REWLCVGFTL LHTMLHVLTY GSSPSPSSAL IQGSSLLQVI MLTFGLRPRF  900
KALVICLTAM LPMTALLNSS MCSAAFGDIS TATCLSNLLV YQVLVCLIVP SCISYKSEVS  960
MRQSFLDSRL KSKKLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A8e-1740114679squamosa promoter binding protein-like 7
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.16e-20squamosa promoter binding protein-like 5