PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_146.g636.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family MYB
Protein Properties Length: 761aa    MW: 84479.3 Da    PI: 7.6707
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_146.g636.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.7e-13853248
                                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                       Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                          g W   Ede+l+ av ++G ++W++I++ +  ++++kqck rw+ +l
  model.Picochlorum_contig_146.g636.t1  8 GVWKNTEDEILKAAVMKYGLNQWARISSLLT-RKSAKQCKARWYEWL 53
                                          78****************************9.************986 PP
2Myb_DNA-binding33.21.2e-1060103248
                                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                             WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  model.Picochlorum_contig_146.g636.t1  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPTQCLERYEKLL 103
                                           68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.936153IPR017930Myb domain
SMARTSM007173.6E-14655IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-18960IPR009057Homeodomain-like
PfamPF139214.3E-131070No hitNo description
CDDcd001671.90E-111053No hitNo description
SuperFamilySSF466898.63E-2133106IPR009057Homeodomain-like
PROSITE profilePS5129420.14854107IPR017930Myb domain
CDDcd116596.05E-3055106No hitNo description
SMARTSM007176.4E-1358105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-1461104IPR009057Homeodomain-like
PfamPF118314.1E-30404618IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MKILIKGGVW KNTEDEILKA AVMKYGLNQW ARISSLLTRK SAKQCKARWY EWLDPAIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPTQCLERYE KLLDMASGRE EGYEAKDDPR  120
RLRPGEIDPH PETKPARPDP VDMDDDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LAALQKKREL KAAGIDVREK AKKGRGIDYA HEVPFERRPA PGFYDVAEEN EMTRAMREEF  240
RPVTKDELEG RKRKDIEKEL IKQDVAKRKI AERKDAPNMI AQQLAAQEAL QSTRRGKMML  300
PAPQVTDAEL EALARDASME GTLASETGSQ ATRALLGDYS TPAPFATPMA TPAAGASGMN  360
KVMQEAQALA RLREGQTPLL GGENPDIAGS DFSGIAPQRT VGATPNPLAT AAAAKIGATP  420
ATARGGMQLD KKPATVQPTP VRRDELKLNA ENGLGEDSNH IASALSNLPA PKGGYQLAPP  480
EMLDEEEDGA VPMEEDAADA EALIAAEKAR QLEEEKKLRS HVVQRNLPRP LSLDLVPKPA  540
TEAAIAAMSD EGEAARHMIL QELVQILNED AKAFPANMPI TDSMSHIDHG FSVSELEAAA  600
KLIDDEVPIV KKDLGHDGAT LSEYSAVWDS MRPNIMYSVE LQRYSLKSKM SEKDILASLK  660
HEYETVRKEM SKCAKRAGKV EQKVGIVLGG LQKRSKSLTT EINEKTNKAN ISKIEKTCYR  720
QLQDQERLAA SARLEHLKEL VEAQESRERT LQEKYKSLQS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027583791Cell division cycle 5-like protein
5xjc_L0.027583791Cell division cycle 5-like protein
5yzg_L0.027583791Cell division cycle 5-like protein
5z56_L0.027583791Cell division cycle 5-like protein
5z57_L0.027583791Cell division cycle 5-like protein
5z58_L0.027583791Cell division cycle 5-like protein
6ff4_L0.027583791Cell division cycle 5-like protein
6ff7_L0.027583791Cell division cycle 5-like protein
6icz_L0.027583791Cell division cycle 5-like protein
6id0_L0.027583791Cell division cycle 5-like protein
6id1_L0.027583791Cell division cycle 5-like protein
6qdv_O0.027583791Cell division cycle 5-like protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005648666.10.0hypothetical protein COCSUDRAFT_65754
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A2P6VLZ80.0A0A2P6VLZ8_9CHLO; Cell division cycle 5 isoform B
STRINGXP_005648666.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP10401617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]