PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_138.g517.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family AP2
Protein Properties Length: 306aa    MW: 33894.5 Da    PI: 5.9962
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_138.g517.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.52.9e-1261110155
                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                           ++++GV+ +k+++r++A+I++      +k+++lg f ++  Aa+ ++ +++k +g
  model.Picochlorum_contig_138.g517.t1  61 KKFRGVTKHKRTQRYEAHIWES-----KKQIYLGGFESELLAARSHDIMALKCKG 110
                                           59*******************4.....5**********99**********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.53E-1361119No hitNo description
PROSITE profilePS5103213.55162119IPR001471AP2/ERF domain
PfamPF008472.0E-662110IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-962118IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-962119IPR001471AP2/ERF domain
SMARTSM003801.5E-1762125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MTWESLSAFG NMMESQSEMI GDTTTAFEKF QGIVEAMFSE TLKKEMVGHV AADILRMRGL  60
KKFRGVTKHK RTQRYEAHIW ESKKQIYLGG FESELLAARS HDIMALKCKG PSCEALNFDG  120
GDYAELTPLL PMVHKEDIIA CLRNYSKGYG VHVDPHRSTH SGKPMNFKLS VQNKPLLKIK  180
KRMYPSGENQ LPMTPQMGSQ KMAPNSPTAL HEPSLFDPVQ PVDDLCPESV FDDQNDNPLT  240
YSPFDESYIF DSFSSGMQGG GGSMLEHLSG GALLSNGRTA SQQLLESKSA MDSLCDDDVL  300
ASFQF*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.13e-16AP2 family protein