PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_135.g487.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family CPP
Protein Properties Length: 628aa    MW: 68393 Da    PI: 6.6331
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_135.g487.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.47.9e-15311351242
                                   TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                                           e+++CnCk+s+Clk+YCeCfa   +C   C C +CkN+ee+
  model.Picochlorum_contig_135.g487.t1 311 EQRTCNCKRSQCLKMYCECFAGSGYCLPGCACVGCKNSEEN 351
                                           6899*********************************9986 PP
2TCR46.57.4e-15379418240
                                   TCR   2 ekkgCnCkkskClkkYCeCfaagkkCsee.CkCedCkNke 40 
                                           ++kgC+Ck+skClkkYCeC++ag+kC+ + C+C +C+N  
  model.Picochlorum_contig_135.g487.t1 379 HQKGCRCKRSKCLKKYCECYNAGVKCNPNiCQCIGCHNAG 418
                                           89*************************988********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.9E-14310351IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163426.793311419IPR005172CRC domain
PfamPF036383.5E-11313348IPR005172CRC domain
SMARTSM011141.2E-11378420IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.1E-12380417IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MQTSQESLQK AFHVAIRQLQ ELQERFINGT ASQVDGELST ALTNQLALIT SLSGAMQHVV  60
DSQQHPQVPL FAPPPPPPPP ANFQDPHAVN MMMMMHYQMQ QNMQQFQNHQ RHALYNNQQQ  120
QQVRQEHQMQ QHDEGAATPS GLQKDHDVKK YNDKTLIVPA RQRSASNRIP RGAEKKLTFL  180
LPETPVDEKK LGARQEAMGA DEVEVAEAML SGAQAAVTPG SLVGGAGRTA STPGKVASTP  240
MAIEVLTNLF TSAADKQDTP VDPDDDEFDF EAQLEGAMKK PKRPRKRPTT AVAKAAAAAA  300
AAVSRPKKNG EQRTCNCKRS QCLKMYCECF AGSGYCLPGC ACVGCKNSEE NVDMVNIARA  360
GILMKDPTAF DEKVKTNGHQ KGCRCKRSKC LKKYCECYNA GVKCNPNICQ CIGCHNAGEP  420
EDAPEDPSES VPVDGDVKDE DMFSGKGLHF PTPEHGAGDD TQKDGRHASL PEGVSFSRTL  480
KEGRKETVEE THKDASAVMS FIEAATPDDV LDIVNSPTPH IEKVEEQPRR ITNVTAIPQH  540
VKENIEPIQK RPRRAASGGV SGAVAAARAD WGLDHISPPS KRVPQPRRST QETKALLLEA  600
LEIQKSREED KDDVDVLSAL IGLNSTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-193004254126Protein lin-54 homolog
5fd3_B9e-193004254126Protein lin-54 homolog
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280287PKRPRKRP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3231530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.12e-28Tesmin/TSO1-like CXC domain-containing protein