PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_135.g457.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family AP2
Protein Properties Length: 483aa    MW: 53221.6 Da    PI: 8.7872
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_135.g457.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.9e-12106165355
                                   AP2   3 ykGVrwdkkrgrWvAeIrd.pse...ng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                           y+GV++++ ++r++A+ +d  +     g   k ++++lg + t+ eAa+a+++a+ ++ g
  model.Picochlorum_contig_135.g457.t1 106 YRGVTQHRLTKRFEAHFWDaSYLrpkPGkrtKGRQVYLGGYTTEVEAARAYDKAAISFLG 165
                                           9******************77778553356444**********99**********98765 PP
2AP248.71.9e-15208259155
                                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                           s+y+GV++++k+ rW+A+I   +   g +k+++lg+f +a+eAa a+++a+ k++g
  model.Picochlorum_contig_135.g457.t1 208 SQYRGVTRHHKQDRWEARIGRiW---G-NKYIYLGTFESAKEAAIAYDKAAVKFKG 259
                                           78*******************99...3.6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-12104174IPR016177DNA-binding domain
CDDcd000183.92E-17104173No hitNo description
PROSITE profilePS5103215.843105173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-14105173IPR001471AP2/ERF domain
SMARTSM003809.5E-21105179IPR001471AP2/ERF domain
PRINTSPR003671.5E-6106117IPR001471AP2/ERF domain
PfamPF008474.9E-7106163IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-17208269IPR016177DNA-binding domain
PfamPF008473.6E-9208258IPR001471AP2/ERF domain
CDDcd000182.28E-21208267No hitNo description
Gene3DG3DSA:3.30.730.107.0E-18209267IPR001471AP2/ERF domain
SMARTSM003804.1E-26209273IPR001471AP2/ERF domain
PROSITE profilePS5103217.346209267IPR001471AP2/ERF domain
PRINTSPR003671.5E-6249269IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MSELQHGQVC ETHAGTEASK EPHDTSRVTN ELKDMHRHGS DGIAIVQVLG QRPPGTVEDK  60
HPQGTATIPG TTQTRKRSCD VRAEQYPKKS RKANPASSTG KFSSMYRGVT QHRLTKRFEA  120
HFWDASYLRP KPGKRTKGRQ VYLGGYTTEV EAARAYDKAA ISFLGLRANL NFPFAEYHDF  180
VEEMGKKTPD EVVAELRRDS VGFARGQSQY RGVTRHHKQD RWEARIGRIW GNKYIYLGTF  240
ESAKEAAIAY DKAAVKFKGR KAMTNFPLDH YNDILVNPDS HEVPLVTDKN KDMPTQHHAN  300
NNQGLGNHQT PFNEYLEGMM MMHPKPVSLV QVPQQQVTMQ PPRQNMMMGA TGGSQPGHTT  360
MSVDFAGNTM GNCQAPPHTG GLSTIDPQSL SPLAASLLSP LGIPHSKGNE NLCRSGDAVS  420
TDLLRMFGAS DPFPQPDPSA AAQSAQQIED DVQRFLESMD ASDINQFLTL LQSAASPNGP  480
SR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-53AP2 family protein