PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_128.g690.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family CPP
Protein Properties Length: 382aa    MW: 42541.2 Da    PI: 7.2906
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_128.g690.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.54.1e-165493242
                                   TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                                          e+k+CnCk+s+Clk+YCeCfaag++C+  C+C dC+N+ee+
  model.Picochlorum_contig_128.g690.t1 54 ERKKCNCKNSRCLKLYCECFAAGRYCDG-CNCVDCHNNEEH 93
                                          579*************************.*********986 PP
2TCR54.32.6e-17123161240
                                   TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                           +kkgCnCkks Clk+YCeCf+ag+ C+e+C C +CkN e
  model.Picochlorum_contig_128.g690.t1 123 HKKGCNCKKSGCLKNYCECFQAGVLCTESCGCVGCKNFE 161
                                           89***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.4E-185393IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.41754162IPR005172CRC domain
PfamPF036384.6E-125691IPR005172CRC domain
SMARTSM011149.1E-19122163IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.6E-13124160IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEEQRQRRKR TARGEEVSPS RQEGRSSGVP PWRGIWGQQL AVPARVSSPS KSIERKKCNC  60
KNSRCLKLYC ECFAAGRYCD GCNCVDCHNN EEHASARDEA VANVLERNPN AFRPKVVEGE  120
KHHKKGCNCK KSGCLKNYCE CFQAGVLCTE SCGCVGCKNF EGSPFKTALQ YEGENTGALT  180
GTGETMRAAR QSIASPVQLS PQKAPATFVA PLQAALSLDQ HNETRAMCVQ DVVTPEVIEQ  240
VCTLLMLLAD ENLEKLQQSN EIVDGILSGN TELLSSLDVD QVTSFVEGLT LWSREQERIM  300
DEEFVSTAKK ICQTIDEKIA EKTRMFQMHQ NMLIQSLLAQ QQQGRLLRSP PRPLYMPHAS  360
GAPEQAPREH QQDETRPKDH R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-32481714132Protein lin-54 homolog
5fd3_B2e-32481714132Protein lin-54 homolog
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00269DAPTransfer from AT2G20110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P6TP822e-53A0A2P6TP82_CHLSO; Tesmin TSO1-like CXC 5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3231530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.17e-50Tesmin/TSO1-like CXC domain-containing protein