PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_126.g558.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | C2H2 | ||||||||
Protein Properties | Length: 686aa MW: 76234.2 Da PI: 8.5279 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 76 | 97 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C Cgk++++ +L +Hi+ H model.Picochlorum_contig_126.g558.t1 76 CLGCGKRYNDVFTLAQHIKDkH 97 999***************9766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 76 | 97 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF55315 | 1.67E-14 | 547 | 681 | IPR029064 | 50S ribosomal protein L30e-like |
Pfam | PF01248 | 2.7E-11 | 579 | 668 | IPR004038 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 |
Gene3D | G3DSA:3.30.1330.30 | 6.7E-10 | 579 | 681 | IPR029064 | 50S ribosomal protein L30e-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 686 aa Download sequence Send to blast |
MEKQMSWAHV AAKNSQKPQE QEKPEASTGN EWVDVNTSGR FQGRIDIQGD KRQRQMALLE 60 QALKSPQDAV SGARWCLGCG KRYNDVFTLA QHIKDKHGGI NSSDKSSDTG QRGQDVMSDY 120 MFPHLGALQA SSSPPHGRSS AVDKRNGASS SRDVPAKVHE ARSTVQRGKR REKKMTTLKK 180 AYLKQKAARM THVWTEIIQL LTEKIAHVEE LNEALEKQIE MFEETKCNTE PMWRELQTLK 240 ESQVILSDQL KQLLTMKALC QEKLKLVEIS LKRKMHRASK TIRKEDVIQD GSQDEVIDLL 300 VSDMTDALSS QPPQALSDDG DEVQTREWQD SVSGVESSLC LDDMSESSSS SDESFDLQWG 360 DTLYSWAQNM GHGQLRGVSQ TRHTTSVESF PVVLTHAGSP KRGIVGKTGD VNPAVTKSVR 420 VISTRFTTSS ASNEQDKSVY SGALNAHSTD EMKFPIVQHG STAVADRSSQ LSKGTHPEID 480 GCNEAMPGLQ TWLEHIESSS HRKNLEKETM KDMIFDTGEI PLSKEGNLSV QPKRYTGNQA 540 DVESYVDQLI TDEGNQKVSA LLQKLIAWQE RTRQMDPVNA KKKRRYVCGM REASKAVKLG 600 KALAVIVAPN IQPLPLNGGY AYPISALLEE CREKKVDIIF ALSRRKMGKL LGQRKNASLF 660 ALLNVSGAEN DLKLLQTMAK DLKVT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 580 | 584 | KKKRR |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP765 | 5 | 5 |