PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_126.g558.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family C2H2
Protein Properties Length: 686aa    MW: 76234.2 Da    PI: 8.5279
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_126.g558.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00177697323
                                          ETTTTEEESSHHHHHHHHHH.T CS
                               zf-C2H2  3 CpdCgksFsrksnLkrHirt.H 23
                                          C  Cgk++++  +L +Hi+  H
  model.Picochlorum_contig_126.g558.t1 76 CLGCGKRYNDVFTLAQHIKDkH 97
                                          999***************9766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002807697IPR007087Zinc finger, C2H2
SuperFamilySSF553151.67E-14547681IPR02906450S ribosomal protein L30e-like
PfamPF012482.7E-11579668IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45
Gene3DG3DSA:3.30.1330.306.7E-10579681IPR02906450S ribosomal protein L30e-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MEKQMSWAHV AAKNSQKPQE QEKPEASTGN EWVDVNTSGR FQGRIDIQGD KRQRQMALLE  60
QALKSPQDAV SGARWCLGCG KRYNDVFTLA QHIKDKHGGI NSSDKSSDTG QRGQDVMSDY  120
MFPHLGALQA SSSPPHGRSS AVDKRNGASS SRDVPAKVHE ARSTVQRGKR REKKMTTLKK  180
AYLKQKAARM THVWTEIIQL LTEKIAHVEE LNEALEKQIE MFEETKCNTE PMWRELQTLK  240
ESQVILSDQL KQLLTMKALC QEKLKLVEIS LKRKMHRASK TIRKEDVIQD GSQDEVIDLL  300
VSDMTDALSS QPPQALSDDG DEVQTREWQD SVSGVESSLC LDDMSESSSS SDESFDLQWG  360
DTLYSWAQNM GHGQLRGVSQ TRHTTSVESF PVVLTHAGSP KRGIVGKTGD VNPAVTKSVR  420
VISTRFTTSS ASNEQDKSVY SGALNAHSTD EMKFPIVQHG STAVADRSSQ LSKGTHPEID  480
GCNEAMPGLQ TWLEHIESSS HRKNLEKETM KDMIFDTGEI PLSKEGNLSV QPKRYTGNQA  540
DVESYVDQLI TDEGNQKVSA LLQKLIAWQE RTRQMDPVNA KKKRRYVCGM REASKAVKLG  600
KALAVIVAPN IQPLPLNGGY AYPISALLEE CREKKVDIIF ALSRRKMGKL LGQRKNASLF  660
ALLNVSGAEN DLKLLQTMAK DLKVT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1580584KKKRR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP76555