PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_108.g657.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family bZIP
Protein Properties Length: 209aa    MW: 23091.8 Da    PI: 6.6783
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_108.g657.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.94.3e-08133201162
                                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLe.......ekvkeLeaeNkaLkkeleelkkevaklkse 62 
                                           e+e k++rr+ +NR +A+r R+RK + i+e         e+v +Le+ +++L  e+++l+++va+l+++
  model.Picochlorum_contig_108.g657.t1 133 EEEKKKTRRLLSNRASAKRARERKAQLIQEMSeqlkmhsERVHQLETMMRDLDLENKKLRQTVASLQQQ 201
                                           7899*********************999887522223337999***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.3E-9132197No hitNo description
SMARTSM003389.2E-6133197IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.622135198IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.3E-6137194No hitNo description
PROSITE patternPS000360140155IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MNPSDIPGSK VVDHRDTSDG VGACPWDACI VDTAGGSEQQ VDLLVGTQDC GLNFLDTELT  60
PSGSDGVSIP FLNSGSSQRM ESERMRYVPV NDYALHPTGQ SVVPGRGDSS HRRSTRGRPG  120
VQYESMIDPN LSEEEKKKTR RLLSNRASAK RARERKAQLI QEMSEQLKMH SERVHQLETM  180
MRDLDLENKK LRQTVASLQQ QILARDGA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134141EKKKTRRL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP46161010