PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_107.g543.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | GATA | ||||||||
Protein Properties | Length: 266aa MW: 29339.4 Da PI: 8.9039 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.3 | 3.3e-16 | 222 | 256 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cgt++Tp WRr+p +k CnaCGly k+g+ model.Picochlorum_contig_107.g543.t1 222 CSHCGTSETPFWRRNPVTEKYMCNACGLYLSKHGE 256 ****************99999************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 7.13E-16 | 213 | 261 | No hit | No description |
SMART | SM00401 | 5.0E-11 | 216 | 264 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 17.068 | 216 | 265 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.4E-20 | 220 | 261 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.80E-19 | 221 | 261 | No hit | No description |
Pfam | PF00320 | 4.7E-14 | 222 | 256 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 222 | 247 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MDKKTKAMNG KKAGKGEVRP NNNDSATNKR SREEGGSEDP IHRDDTVFDT TFGSAEEAIA 60 DLPEALKALE KPSTVPFEDV VPILKSLQSF QAIVKFLADQ VQQMQQTMPH VVAPLEAMVP 120 SIRGAVDEGK GGSAAAKDQV HLWWKGSDLS VEDIGKTFDK VLKQIPDERV IDLEMIRTVK 180 EALKDVPKHV ADSVVAGLKK RSTVKKKRRR ASKATVDKDR VCSHCGTSET PFWRRNPVTE 240 KYMCNACGLY LSKHGEQRPL DDTNT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 204 | 209 | KKKRRR |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4198 | 11 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 8e-10 | GATA transcription factor 16 |