PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_107.g543.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family GATA
Protein Properties Length: 266aa    MW: 29339.4 Da    PI: 8.9039
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_107.g543.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.33.3e-16222256135
                                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                           Cs+Cgt++Tp WRr+p  +k  CnaCGly  k+g+
  model.Picochlorum_contig_107.g543.t1 222 CSHCGTSETPFWRRNPVTEKYMCNACGLYLSKHGE 256
                                           ****************99999************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.13E-16213261No hitNo description
SMARTSM004015.0E-11216264IPR000679Zinc finger, GATA-type
PROSITE profilePS5011417.068216265IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-20220261IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.80E-19221261No hitNo description
PfamPF003204.7E-14222256IPR000679Zinc finger, GATA-type
PROSITE patternPS003440222247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDKKTKAMNG KKAGKGEVRP NNNDSATNKR SREEGGSEDP IHRDDTVFDT TFGSAEEAIA  60
DLPEALKALE KPSTVPFEDV VPILKSLQSF QAIVKFLADQ VQQMQQTMPH VVAPLEAMVP  120
SIRGAVDEGK GGSAAAKDQV HLWWKGSDLS VEDIGKTFDK VLKQIPDERV IDLEMIRTVK  180
EALKDVPKHV ADSVVAGLKK RSTVKKKRRR ASKATVDKDR VCSHCGTSET PFWRRNPVTE  240
KYMCNACGLY LSKHGEQRPL DDTNT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209KKKRRR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41981111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.18e-10GATA transcription factor 16