PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_107.g530.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | C2H2 | ||||||||
Protein Properties | Length: 234aa MW: 25775.1 Da PI: 8.2718 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.00053 | 194 | 215 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 Cp+C+ ++++ +L+ H + H model.Picochlorum_contig_107.g530.t1 194 CPHCDVVCKDAVQLVAHVEKwH 215 *****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 8.37E-13 | 8 | 55 | No hit | No description |
PROSITE profile | PS51039 | 8.039 | 9 | 55 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 3.0E-11 | 10 | 56 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 6.9E-13 | 12 | 48 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 1.0E-9 | 12 | 51 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 2.04E-6 | 93 | 148 | No hit | No description |
Gene3D | G3DSA:4.10.1110.10 | 8.5E-7 | 95 | 150 | IPR000058 | Zinc finger, AN1-type |
PROSITE profile | PS51039 | 6.926 | 100 | 149 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 6.8E-7 | 103 | 143 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.11 | 103 | 145 | IPR000058 | Zinc finger, AN1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDFDYLGIGT NCQFQECKQL DFLPFRCSGC NKIYCGEHRH AKDHACSSPP TAAEEKTIVI 60 CPVCARGVRV AEGLEADYVI DRHMQSGECD PQNYKRVHGK RRCPVKGCRE RLTTVNSYQC 120 PHCGTETCLR HRYKASDHAC TGRKSSSHQS FTSSFVSTCR NMLSSSIGQS HSVGSSKNKA 180 ARGHGRHVRE AAACPHCDVV CKDAVQLVAH VEKWHSNVSG RCPPQEDTAC VVM* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00306 | DAP | Transfer from AT2G41835 | Download |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4812 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57480.1 | 7e-33 | C2H2 family protein |