PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_104.g635.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family MYB
Protein Properties Length: 482aa    MW: 52142.6 Da    PI: 9.4794
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_104.g635.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-172167147
                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                          r  W++eEd +l+++v+ +G+ +W+++a+t+g+gR +k+c++rw++ 
  model.Picochlorum_contig_104.g635.t1 21 RTCWSPEEDVKLIQLVETYGPQNWSLVAKTLGTGRNGKSCRLRWFNQ 67
                                          668*****************************************996 PP
2Myb_DNA-binding48.61.9e-1574118147
                                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                           + +++ eE+e+++  +++lG++ W++Iar ++ gRt++ +k++w+ +
  model.Picochlorum_contig_104.g635.t1  74 KEPFSLEEEEIIIAKHHELGNR-WAAIARFLP-GRTDNAIKNFWNGH 118
                                           579*******************.*********.***********966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.7271672IPR017930Myb domain
SuperFamilySSF466892.7E-2920115IPR009057Homeodomain-like
SMARTSM007176.3E-142070IPR001005SANT/Myb domain
PfamPF002491.1E-152167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-242475IPR009057Homeodomain-like
CDDcd001674.88E-122466No hitNo description
PROSITE profilePS5129419.11973123IPR017930Myb domain
SMARTSM007172.5E-1573121IPR001005SANT/Myb domain
PfamPF002492.6E-1374118IPR001005SANT/Myb domain
CDDcd001672.34E-1176119No hitNo description
Gene3DG3DSA:1.10.10.602.6E-2276122IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MSWRDVYTSD VDEYQESQSR RTCWSPEEDV KLIQLVETYG PQNWSLVAKT LGTGRNGKSC  60
RLRWFNQLDP SLKKEPFSLE EEEIIIAKHH ELGNRWAAIA RFLPGRTDNA IKNFWNGHLK  120
KRAMSRANEL ASSKKLRTLA GLALSADGEG EAEKTDHGPL PQPGRKAARS LASSPAKMQV  180
VTKNLPSPNH HTSPSSHNHV TRAATGSLRR KNIADMEEID ALEEEVGRGA KYGGTGSNDS  240
SQNRVIVDQY ADMGRVGLQN HIERSLSSAG SQTYHMCDPA VFASFSTLMT SLFPSPAVHE  300
TMSESQKQSL LHFHDVFNKI LSNPIKLEPV QFGNGSTTAT PLKGAPDTSR TSQATMLGEL  360
MLTMTDLFPG MAAAIQGMSK RLSQTHRGGP AQTIGSPSKG SSTQLLQTSL SDVLAARIGG  420
SKPRGHVVHV DASTPSKRTS LGDSEKSAAM GLRTPASVQP KQASNESALA FLAMAASMED  480
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-32241227104MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-312412261158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-312412261158MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-32241227104C-Myb DNA-Binding Domain
1msf_C4e-32241227104C-Myb DNA-Binding Domain
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00145DAPTransfer from AT1G17950Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.16e-34myb domain protein 52