PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.I004400.1.p | ||||||||
Common Name | PRUPE_ppa002166mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | GRAS | ||||||||
Protein Properties | Length: 707aa MW: 79888.5 Da PI: 5.8234 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 381.9 | 7.4e-117 | 333 | 704 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 +lL++cA+av+s d++ a++lL+++++++sp+gd++qR a+yf+ +L+arla+ + y+ l + + s +e l+a+++++ sP+ k+ Prupe.I004400.1.p 333 STLLTQCAQAVASYDQRTASELLKQIRQHSSPYGDATQRSAHYFADGLEARLAGARTPSYSPLVSMQIS---AAEILKAHEVYVTSSPFKKL 421 579***************************************************999999999999998...9******************* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183 s+++aN++Il+ +e+++r+H+iDf+is+G+QWp++++ L++Rp+gpp+lRiT+++ p++g +e++eetg+rL+k+Ae+++vpfe+nv +a Prupe.I004400.1.p 422 SNFLANRTILKLAEKATRLHVIDFGISYGFQWPCFIHRLSERPGGPPKLRITAIELPQPGfrPTERVEETGRRLEKYAERFNVPFEYNV-IA 512 ***********************************************************9****************************9.7* PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 +++e++++e+L+++++E+++Vn++ +l++++de+v ++s+rd vLkl+k+++P+++++ + +ns+ F++rf eal ++salfd++ea++ Prupe.I004400.1.p 513 QKWETIQFEDLKIDRNEVIVVNCMNRLKHMPDETVMVNSPRDIVLKLIKKINPDLFIHGVVNGTYNSPFFVTRFKEALFHFSALFDMFEASV 604 ******************************************************************************************** PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrp 366 pre+e r E+++ gr+i nvvaceg er+er et+++W+ r +aGFk++pl+++ k +k++l+ ++ + ++++e+ +++++gWk+r Prupe.I004400.1.p 605 PREDERRLLFEKAVYGRDILNVVACEGLERVERPETYKQWQVRNVRAGFKQLPLDQELLKRVKRMLKFMGyHNDFSIDEDGHWMLQGWKGRI 696 *******************************************************************9999999****************** PP GRAS 367 LvsvSaWr 374 ++S+W+ Prupe.I004400.1.p 697 TRALSFWK 704 *******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.535 | 306 | 683 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.6E-114 | 333 | 704 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 707 aa Download sequence Send to blast |
MDTLLERYYL SMERFNFGHG SASLYSNQNL VNGFQVNQES TSPVHLSTNL DHPSDSSTSL 60 SSGSDGDTVD FSDYNHPVLK YVSDILLEED LEGKTCMLQD CLALQAAEKS FYDVLNQEDP 120 PSPNQLPLSV HQSFENSDDD SPRSCHRSNG SIAPNTDWVF DPSETSNVQS SLVQSLSDAG 180 LVSDSLSEIG HSGGLGEASK FLPNVKLEGN RLMPPGLDQW PSSTNILMTT PDNDGYNSTN 240 GSKGKKNHQR EDADYPEEGR SNKQPVAFAD DSEPQEMFDE VLLCHGNHEF ESCSPDESLI 300 AEGSGKLQRN KQKGSKTARS KKQNNNWELV DLSTLLTQCA QAVASYDQRT ASELLKQIRQ 360 HSSPYGDATQ RSAHYFADGL EARLAGARTP SYSPLVSMQI SAAEILKAHE VYVTSSPFKK 420 LSNFLANRTI LKLAEKATRL HVIDFGISYG FQWPCFIHRL SERPGGPPKL RITAIELPQP 480 GFRPTERVEE TGRRLEKYAE RFNVPFEYNV IAQKWETIQF EDLKIDRNEV IVVNCMNRLK 540 HMPDETVMVN SPRDIVLKLI KKINPDLFIH GVVNGTYNSP FFVTRFKEAL FHFSALFDMF 600 EASVPREDER RLLFEKAVYG RDILNVVACE GLERVERPET YKQWQVRNVR AGFKQLPLDQ 660 ELLKRVKRML KFMGYHNDFS IDEDGHWMLQ GWKGRITRAL SFWKKA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-48 | 314 | 703 | 1 | 378 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.19985 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.I004400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007211325.1 | 0.0 | scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | M5WFN1 | 0.0 | M5WFN1_PRUPE; Uncharacterized protein | ||||
STRING | EMJ12524 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.I004400.1.p |
Entrez Gene | 18778129 |
Publications ? help Back to Top | |||
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