PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.I001300.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 384aa    MW: 44635.9 Da    PI: 8.0557
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.I001300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.19.6e-2668153191
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        ++Yn+YA+ vGFsvrk + +k  +ng i kr+f+Cs+eg+ +++++     +++r++ r gCka+l++k+++dgk++v++++ eHnH+l+p
  Prupe.I001300.1.p  68 QYYNSYARGVGFSVRKLRVNKD-KNGVIHKREFYCSCEGFYRKKTTP----KKKREQRRFGCKAMLVIKLNRDGKYVVKNFVAEHNHDLVP 153
                        69****************9998.8999*************9998777....899999*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-2368153IPR004330FAR1 DNA binding domain
PfamPF105517.6E-7260307IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MNHEEDEFHA TYSNDGKESV DCIHLDSDSN SKSLDLLDHN EQIEELTRKF GDIPTLGMSF  60
DNEQEAYQYY NSYARGVGFS VRKLRVNKDK NGVIHKREFY CSCEGFYRKK TTPKKKREQR  120
RFGCKAMLVI KLNRDGKYVV KNFVAEHNHD LVPLSSSHLL RSQRTIEPCQ AGFINQMHHA  180
GLKPSKIFSY MTTEAGRPQH LNFIQAYCNN LIMRKRTEFQ NRGDSQCLLE YFKQKQAQDK  240
SFFYSIQTNM ETESVVVFYI LFGCGLLDGE STNACEWLFK VFLQANERKE PKTIFTDHAQ  300
SIAAAIIEFN FGRALIYFKP WEAFERAKLR LLQYEGAELG GLKDLISWNY TVKFVEVLKL  360
CLSWLLLNQI CNERSLVLND LFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.I001300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224311.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1R3L4X60.0A0A1R3L4X6_PRUPE; Uncharacterized protein
STRINGEMJ224180.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2218223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-41FAR1-related sequence 5