PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.I001300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 384aa MW: 44635.9 Da PI: 8.0557 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82.1 | 9.6e-26 | 68 | 153 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Yn+YA+ vGFsvrk + +k +ng i kr+f+Cs+eg+ +++++ +++r++ r gCka+l++k+++dgk++v++++ eHnH+l+p Prupe.I001300.1.p 68 QYYNSYARGVGFSVRKLRVNKD-KNGVIHKREFYCSCEGFYRKKTTP----KKKREQRRFGCKAMLVIKLNRDGKYVVKNFVAEHNHDLVP 153 69****************9998.8999*************9998777....899999*******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.2E-23 | 68 | 153 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.6E-7 | 260 | 307 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MNHEEDEFHA TYSNDGKESV DCIHLDSDSN SKSLDLLDHN EQIEELTRKF GDIPTLGMSF 60 DNEQEAYQYY NSYARGVGFS VRKLRVNKDK NGVIHKREFY CSCEGFYRKK TTPKKKREQR 120 RFGCKAMLVI KLNRDGKYVV KNFVAEHNHD LVPLSSSHLL RSQRTIEPCQ AGFINQMHHA 180 GLKPSKIFSY MTTEAGRPQH LNFIQAYCNN LIMRKRTEFQ NRGDSQCLLE YFKQKQAQDK 240 SFFYSIQTNM ETESVVVFYI LFGCGLLDGE STNACEWLFK VFLQANERKE PKTIFTDHAQ 300 SIAAAIIEFN FGRALIYFKP WEAFERAKLR LLQYEGAELG GLKDLISWNY TVKFVEVLKL 360 CLSWLLLNQI CNERSLVLND LFL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.I001300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007224311.2 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A1R3L4X6 | 0.0 | A0A1R3L4X6_PRUPE; Uncharacterized protein | ||||
STRING | EMJ22418 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22182 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 7e-41 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.I001300.1.p |