PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G264900.1.p | ||||||||
Common Name | PRUPE_ppa008730mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 322aa MW: 35682.6 Da PI: 5.5524 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.8e-19 | 78 | 126 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f t+eeAa+a+++ ++k++g Prupe.8G264900.1.p 78 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTPEEAARAYDREARKIRG 126 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.3E-38 | 77 | 140 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.63 | 77 | 134 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-32 | 77 | 135 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-22 | 77 | 135 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.0E-12 | 78 | 126 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.31E-33 | 78 | 135 | No hit | No description |
PRINTS | PR00367 | 2.5E-11 | 78 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MCGGAILSNL IPRNRGLRVT ASDIWPNSPF AKLNPDNFFD YNPSPLTRTD SSPRKRAQPT 60 SGNRQEEKPP KRARKNLYRG IRQRPWGKWA AEIRDPRKGV RVWLGTFNTP EEAARAYDRE 120 ARKIRGKKAK VNFPNEDDDI PTQTYLRNPN PPSLFQTSSE NLSNSHMPKS FDLGFGYDLN 180 QIATISSNSN SKGLSSMNLV NTDPTVISGE ENSGSGSDGA YSSTAGLLGC NQNGSSCCYG 240 EAEVKELEET KEGILNKDAI AIMEENEVQK LSEELMAYEN MMKFYQIPYL DGQSTATQHP 300 PAQEGMVGDL WSFDDDRVSA P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 78 | 134 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 4e-21 | 73 | 136 | 10 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.20259 | 0.0 | fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G264900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ825097 | 0.0 | HQ825097.1 Prunus persica cultivar Venture ethylene responsive factor (ERF2.b) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007200418.1 | 0.0 | ethylene-responsive transcription factor ERF071 | ||||
TrEMBL | M5VKI0 | 0.0 | M5VKI0_PRUPE; Uncharacterized protein | ||||
STRING | EMJ01617 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6771 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 4e-34 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G264900.1.p |
Entrez Gene | 18767585 |