PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G260200.9.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 440aa    MW: 49430.2 Da    PI: 7.7229
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G260200.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3314.5e-10115242199
                         EEEE-..-HHHHTT-EE--HHH.HTT.................---.................--SEEEEEETTS-EEEEEE...EEETTE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.................ggkke...............esktltledesgrsWevkliy.rkksgr 58 
                         f  v+++ +v++s+  ++pk+ +e++                 +                    s+++ l    +++W+v+++    +++r
  Prupe.8G260200.9.p 115 FMVVMSKTSVTQSN-TMIPKTSVEKIqldklctscepffppppN---VkkklstvrfgmftlrISRKICLGEWGSKKWRVEIKNeLAHRCR 201
                         56677777888887.88999999999666666666666655541...0444556666666666777888777777*******878899999 PP

                         EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  59 yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         +++++ W  Fv++n+L +gD vvF++  ++ +  +v+v+r+
  Prupe.8G260200.9.p 202 TTIGREWLTFVRENQLLVGDHVVFRVLPSTMGLVLVGVYRH 242
                         *************************7755444477887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-9111141IPR015300DNA-binding pseudobarrel domain
CDDcd100176.29E-7115226No hitNo description
SuperFamilySSF1019362.94E-8115241IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-7115241IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-9173230IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.559175243IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MLRPPPHQTA ARGRKKTHLT AASESPSLSL PPRGSTTPRV IDHHLQGSTS TSPSLSSSHH  60
RLQGSSSASS SLSSSLSLPQ RSSTITGQII VFEFHDVDEV GCEASKHLAM DDNQFMVVMS  120
KTSVTQSNTM IPKTSVEKIQ LDKLCTSCEP FFPPPPNVKK KLSTVRFGMF TLRISRKICL  180
GEWGSKKWRV EIKNELAHRC RTTIGREWLT FVRENQLLVG DHVVFRVLPS TMGLVLVGVY  240
RHNPATPPRA SSSVRPHEDQ DLSEVVQKLN DVIKLRNEEL EAKEETIRKL RNEELEAKEE  300
TIRKLSERLL SELGERLLLE QRISGLVKSQ ADKNDFLEKK IQQEFAVAHS TLAIMNSEIA  360
SLESNLKDID RNHQLILRTQ WDQLAELEVV VKEEQLMRER LFNTIEGSHQ LIANDPTENV  420
ASRGEDQEPA TLPSRPDTL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G260200.9.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020426333.10.0uncharacterized protein LOC109950738
RefseqXP_020426334.10.0uncharacterized protein LOC109950738
RefseqXP_020426335.10.0uncharacterized protein LOC109950738
RefseqXP_020426336.10.0uncharacterized protein LOC109950738
TrEMBLA0A251N3J40.0A0A251N3J4_PRUPE; Uncharacterized protein
STRINGXP_008235227.11e-177(Prunus mume)