PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.8G260200.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 440aa MW: 49430.2 Da PI: 7.7229 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31 | 4.5e-10 | 115 | 242 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.................---.................--SEEEEEETTS-EEEEEE...EEETTE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.................ggkke...............esktltledesgrsWevkliy.rkksgr 58 f v+++ +v++s+ ++pk+ +e++ + s+++ l +++W+v+++ +++r Prupe.8G260200.5.p 115 FMVVMSKTSVTQSN-TMIPKTSVEKIqldklctscepffppppN---VkkklstvrfgmftlrISRKICLGEWGSKKWRVEIKNeLAHRCR 201 56677777888887.88999999999666666666666655541...0444556666666666777888777777*******878899999 PP EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 59 yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++++ W Fv++n+L +gD vvF++ ++ + +v+v+r+ Prupe.8G260200.5.p 202 TTIGREWLTFVRENQLLVGDHVVFRVLPSTMGLVLVGVYRH 242 *************************7755444477887776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.2E-9 | 111 | 141 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.29E-7 | 115 | 226 | No hit | No description |
SuperFamily | SSF101936 | 2.94E-8 | 115 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.6E-7 | 115 | 241 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-9 | 173 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.559 | 175 | 243 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 440 aa Download sequence Send to blast |
MLRPPPHQTA ARGRKKTHLT AASESPSLSL PPRGSTTPRV IDHHLQGSTS TSPSLSSSHH 60 RLQGSSSASS SLSSSLSLPQ RSSTITGQII VFEFHDVDEV GCEASKHLAM DDNQFMVVMS 120 KTSVTQSNTM IPKTSVEKIQ LDKLCTSCEP FFPPPPNVKK KLSTVRFGMF TLRISRKICL 180 GEWGSKKWRV EIKNELAHRC RTTIGREWLT FVRENQLLVG DHVVFRVLPS TMGLVLVGVY 240 RHNPATPPRA SSSVRPHEDQ DLSEVVQKLN DVIKLRNEEL EAKEETIRKL RNEELEAKEE 300 TIRKLSERLL SELGERLLLE QRISGLVKSQ ADKNDFLEKK IQQEFAVAHS TLAIMNSEIA 360 SLESNLKDID RNHQLILRTQ WDQLAELEVV VKEEQLMRER LFNTIEGSHQ LIANDPTENV 420 ASRGEDQEPA TLPSRPDTL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.8G260200.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020426333.1 | 0.0 | uncharacterized protein LOC109950738 | ||||
Refseq | XP_020426334.1 | 0.0 | uncharacterized protein LOC109950738 | ||||
Refseq | XP_020426335.1 | 0.0 | uncharacterized protein LOC109950738 | ||||
Refseq | XP_020426336.1 | 0.0 | uncharacterized protein LOC109950738 | ||||
TrEMBL | A0A251N3J4 | 0.0 | A0A251N3J4_PRUPE; Uncharacterized protein | ||||
STRING | XP_008235227.1 | 1e-177 | (Prunus mume) |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.8G260200.5.p |