PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.8G255600.2.p

Common Name

PRUPE_ppa000815mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

HB-other

Protein Properties

Length: 977aa MW: 108688 Da PI: 8.9258

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.8G255600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.2	2.1e-06	65	121	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +eL++ g+t +qV+ +F +R + +k Prupe.8G255600.2.p 65 KRPRDLLNPKAIKYMQSVFSIKDAISKKESRELSALFGVTGTQVRDFFNSQRSRVRK 121 799**************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.961	62	122	IPR001356	Homeobox domain
SMART	SM00389	8.6E-4	64	126	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.51E-6	64	125	IPR009057	Homeodomain-like
CDD	cd00086	8.08E-4	65	121	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.3E-5	65	132	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.20.930.10	1.3E-5	222	313	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 977 aa Download sequence Send to blast
MEDLSEMEIG SSVESFQKFL DSQRQLFHSQ IDQLQKVVVT QCNLTGVNPL SQEMAAGALS 60 VKIGKRPRDL LNPKAIKYMQ SVFSIKDAIS KKESRELSAL FGVTGTQVRD FFNSQRSRVR 120 KLVQLSREKA TRSSEHKELQ DGVSTSSDPL TPIDPVPLNS VGPSSVEDAP SCSTQDDALS 180 GLDDLDKHFV DNIFNLMRKE ETFSGQEKLM EWILQIQNSS VLCWFLNTGG VMILATWLSQ 240 AAIEEQTSVL LVILKVLCHL PLHKALPVHM SAILQSVNRL RFYRTADVSN RARVLLSRWS 300 KLLARIQNMK KPNGMKTSSD SQHELVMLKQ SIDEVMGDES WKSNIDIPED IFATPFENAE 360 NSRRSEASEP LKLLTASSDE SNKKQILGVS SSQFRARRKV QLVEQPGQKS AGRSVQVTRA 420 TPVSKGRPMS ADDIQKAKMR AQFMQSKYGK SGSSNENKEL KTEGGNKLST SQDSILPVVP 480 KVPVRPNIEE PKKPVTLLLK ERETPNRLET SLAPKLRMDL KESILEKCQR IRVPWKTPPE 540 IKLDPEWRVG GGENGKEIEV QRNRNHREKE TIYQRVQDIP SNPKEPWDIE MDYDDSLTPE 600 IPIEQPPDAD GTETHSLSRE GNNAQTWVAS SQGVNSAASL APALSQMNGA SAAAEPDLEL 660 LAVLLKNPEL VFALTSGQAA NLSSEDTVKL LDMIKSGGAG NLNGLGRKME QRVEVSLPSP 720 TPSSNPGTSG WRADAGRNAF PQQMATTNNS SVSSSVHMIP SQRLSTSQPA VPSYSPDYFP 780 PSMQTPAASE MVLTMKNTHL NNLSNSYNVA ERQPNSFPTP LVSTPARQQR QPQPLQQPRF 840 SEPRLPTHMY PSKPQMGKPG PPPPSDSWRA RQDVPSNYHY LENQNQYNAS HGGPLQQPQL 900 LPGPSWERNE HVGGNQDFES WSPDNSPTRN PGYMYGREPR MNPARDYMPD RSRQMNPSGY 960 GGQNRLGNRW PDRGRH*

Sequence ? help Back to Top

Protein Sequence Length: 977 aa Download sequence Send to blast

MEDLSEMEIG SSVESFQKFL DSQRQLFHSQ IDQLQKVVVT QCNLTGVNPL SQEMAAGALS  60
VKIGKRPRDL LNPKAIKYMQ SVFSIKDAIS KKESRELSAL FGVTGTQVRD FFNSQRSRVR  120
KLVQLSREKA TRSSEHKELQ DGVSTSSDPL TPIDPVPLNS VGPSSVEDAP SCSTQDDALS  180
GLDDLDKHFV DNIFNLMRKE ETFSGQEKLM EWILQIQNSS VLCWFLNTGG VMILATWLSQ  240
AAIEEQTSVL LVILKVLCHL PLHKALPVHM SAILQSVNRL RFYRTADVSN RARVLLSRWS  300
KLLARIQNMK KPNGMKTSSD SQHELVMLKQ SIDEVMGDES WKSNIDIPED IFATPFENAE  360
NSRRSEASEP LKLLTASSDE SNKKQILGVS SSQFRARRKV QLVEQPGQKS AGRSVQVTRA  420
TPVSKGRPMS ADDIQKAKMR AQFMQSKYGK SGSSNENKEL KTEGGNKLST SQDSILPVVP  480
KVPVRPNIEE PKKPVTLLLK ERETPNRLET SLAPKLRMDL KESILEKCQR IRVPWKTPPE  540
IKLDPEWRVG GGENGKEIEV QRNRNHREKE TIYQRVQDIP SNPKEPWDIE MDYDDSLTPE  600
IPIEQPPDAD GTETHSLSRE GNNAQTWVAS SQGVNSAASL APALSQMNGA SAAAEPDLEL  660
LAVLLKNPEL VFALTSGQAA NLSSEDTVKL LDMIKSGGAG NLNGLGRKME QRVEVSLPSP  720
TPSSNPGTSG WRADAGRNAF PQQMATTNNS SVSSSVHMIP SQRLSTSQPA VPSYSPDYFP  780
PSMQTPAASE MVLTMKNTHL NNLSNSYNVA ERQPNSFPTP LVSTPARQQR QPQPLQQPRF  840
SEPRLPTHMY PSKPQMGKPG PPPPSDSWRA RQDVPSNYHY LENQNQYNAS HGGPLQQPQL  900
LPGPSWERNE HVGGNQDFES WSPDNSPTRN PGYMYGREPR MNPARDYMPD RSRQMNPSGY  960
GGQNRLGNRW PDRGRH*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Accumulates prior to flowering in the vegetative shoot apical meristem and after flowering in floral meristems.
Uniprot	TISSUE SPECIFICITY: Expressed in shoot apex, root apex, leaf primordia and floral buds.

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.8G255600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020426188.1	0.0	homeobox protein LUMINIDEPENDENS isoform X2
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A251N6G8	0.0	A0A251N6G8_PRUPE; Uncharacterized protein
STRING	XP_008235014.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Link Out ? help Back to Top
Phytozome	Prupe.8G255600.2.p
Entrez Gene	18767188

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]