PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G255600.1.p | ||||||||
Common Name | PRUPE_ppa000815mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HB-other | ||||||||
Protein Properties | Length: 982aa MW: 109176 Da PI: 8.7704 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 19.2 | 2.1e-06 | 70 | 126 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +eL++ g+t +qV+ +F +R + +k Prupe.8G255600.1.p 70 KRPRDLLNPKAIKYMQSVFSIKDAISKKESRELSALFGVTGTQVRDFFNSQRSRVRK 126 799**************************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.847 | 67 | 127 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.6E-4 | 69 | 131 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-5 | 69 | 137 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.84E-6 | 69 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.70E-4 | 70 | 126 | No hit | No description |
Gene3D | G3DSA:1.20.930.10 | 1.3E-5 | 227 | 318 | IPR017923 | Transcription factor IIS, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 982 aa Download sequence Send to blast |
MEDLSEMEIG SSVESFQKFL DSQRQLFHSQ IDQLQKVVVT QCNLTGVNPL SQEMAAGALS 60 VKIDGPFAGK RPRDLLNPKA IKYMQSVFSI KDAISKKESR ELSALFGVTG TQVRDFFNSQ 120 RSRVRKLVQL SREKATRSSE HKELQDGVST SSDPLTPIDP VPLNSVGPSS VEDAPSCSTQ 180 DDALSGLDDL DKHFVDNIFN LMRKEETFSG QEKLMEWILQ IQNSSVLCWF LNTGGVMILA 240 TWLSQAAIEE QTSVLLVILK VLCHLPLHKA LPVHMSAILQ SVNRLRFYRT ADVSNRARVL 300 LSRWSKLLAR IQNMKKPNGM KTSSDSQHEL VMLKQSIDEV MGDESWKSNI DIPEDIFATP 360 FENAENSRRS EASEPLKLLT ASSDESNKKQ ILGVSSSQFR ARRKVQLVEQ PGQKSAGRSV 420 QVTRATPVSK GRPMSADDIQ KAKMRAQFMQ SKYGKSGSSN ENKELKTEGG NKLSTSQDSI 480 LPVVPKVPVR PNIEEPKKPV TLLLKERETP NRLETSLAPK LRMDLKESIL EKCQRIRVPW 540 KTPPEIKLDP EWRVGGGENG KEIEVQRNRN HREKETIYQR VQDIPSNPKE PWDIEMDYDD 600 SLTPEIPIEQ PPDADGTETH SLSREGNNAQ TWVASSQGVN SAASLAPALS QMNGASAAAE 660 PDLELLAVLL KNPELVFALT SGQAANLSSE DTVKLLDMIK SGGAGNLNGL GRKMEQRVEV 720 SLPSPTPSSN PGTSGWRADA GRNAFPQQMA TTNNSSVSSS VHMIPSQRLS TSQPAVPSYS 780 PDYFPPSMQT PAASEMVLTM KNTHLNNLSN SYNVAERQPN SFPTPLVSTP ARQQRQPQPL 840 QQPRFSEPRL PTHMYPSKPQ MGKPGPPPPS DSWRARQDVP SNYHYLENQN QYNASHGGPL 900 QQPQLLPGPS WERNEHVGGN QDFESWSPDN SPTRNPGYMY GREPRMNPAR DYMPDRSRQM 960 NPSGYGGQNR LGNRWPDRGR H* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates prior to flowering in the vegetative shoot apical meristem and after flowering in floral meristems. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot apex, root apex, leaf primordia and floral buds. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G255600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020426187.1 | 0.0 | homeobox protein LUMINIDEPENDENS isoform X1 | ||||
Swissprot | Q38796 | 0.0 | LUMI_ARATH; Homeobox protein LUMINIDEPENDENS | ||||
TrEMBL | A0A251N3G3 | 0.0 | A0A251N3G3_PRUPE; Uncharacterized protein | ||||
STRING | XP_008235014.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9809 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02560.2 | 0.0 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G255600.1.p |
Entrez Gene | 18767188 |
Publications ? help Back to Top | |||
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