PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G253900.2.p | ||||||||
Common Name | PRUPE_ppa006893mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | CO-like | ||||||||
Protein Properties | Length: 392aa MW: 43379.3 Da PI: 6.4477 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.3 | 1.3e-07 | 20 | 64 | 2 | 40 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 ++r C+ +++ + l+C+ ++ lC C e H+ Ht++ Prupe.8G253900.2.p 20 QKRLCDYCGSSMALLYCRADSAKLCFLCDREVHSAnqlfskHTRS 64 7899******99*********************667888888875 PP | |||||||
2 | zf-B_box | 29.2 | 1.8e-09 | 65 | 107 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ ++ ++++fC++ ++ lC++C e+H + H+++p Prupe.8G253900.2.p 65 LLCDACDGSPASIFCTTESSVLCQNCDWESH-NlssssvHDRRP 107 57*****************************.558888898877 PP | |||||||
3 | CCT | 62.9 | 1e-21 | 347 | 389 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Re al+RYkeK+ktR++eK+irYesRK++AesR R+KGrF+k Prupe.8G253900.2.p 347 RETALSRYKEKKKTRRYEKHIRYESRKVRAESRTRIKGRFAKM 389 99***************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.9E-16 | 19 | 66 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.409 | 19 | 66 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.4E-6 | 20 | 64 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.11E-7 | 22 | 66 | No hit | No description |
PROSITE profile | PS50119 | 10.836 | 62 | 108 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.7E-7 | 65 | 107 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.07E-5 | 66 | 108 | No hit | No description |
SMART | SM00336 | 0.22 | 67 | 108 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 14.753 | 347 | 389 | IPR010402 | CCT domain |
Pfam | PF06203 | 5.2E-16 | 347 | 389 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MNGSSRNEEA EAPQPEREHQ KRLCDYCGSS MALLYCRADS AKLCFLCDRE VHSANQLFSK 60 HTRSLLCDAC DGSPASIFCT TESSVLCQNC DWESHNLSSS SVHDRRPLEG FSGCPCLNEL 120 LTVVGFENMD KKALLLSDES GGGGGGGDGF LGCGVDGSFD LDDGFSDFLV WDTPSVVSLD 180 DLIVSNPAYK FQAMGVPPLP KNRNAACGRH KEEIFRQLRV LVKSEPNLFS ENVDVKPLKS 240 LASEQNMQRG SLFTGFEHDA EPTVFPAYEA HDFQYNDCGA AEKRESSPKT FIRSYLQECC 300 VVPDKHSYND GSASHANDGH GHGGQMNSEA SSAFPKVAAH ELSSQNRETA LSRYKEKKKT 360 RRYEKHIRYE SRKVRAESRT RIKGRFAKMD H* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G253900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007201078.1 | 0.0 | zinc finger protein CONSTANS-LIKE 13 | ||||
TrEMBL | M5VM63 | 0.0 | M5VM63_PRUPE; Uncharacterized protein | ||||
STRING | EMJ02277 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47890.1 | 7e-82 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G253900.2.p |
Entrez Gene | 18766742 |