PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G253900.1.p
Common NamePRUPE_ppa006893mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CO-like
Protein Properties Length: 392aa    MW: 43379.3 Da    PI: 6.4477
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G253900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.31.3e-072064240
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        ++r C+ +++  + l+C+ ++  lC  C  e H+       Ht++
  Prupe.8G253900.1.p 20 QKRLCDYCGSSMALLYCRADSAKLCFLCDREVHSAnqlfskHTRS 64
                        7899******99*********************667888888875 PP
2zf-B_box29.21.8e-0965107441
            zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                           C+ ++  ++++fC++ ++ lC++C  e+H +      H+++p
  Prupe.8G253900.1.p  65 LLCDACDGSPASIFCTTESSVLCQNCDWESH-NlssssvHDRRP 107
                         57*****************************.558888898877 PP
3CCT62.91e-21347389143
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                         Re al+RYkeK+ktR++eK+irYesRK++AesR R+KGrF+k 
  Prupe.8G253900.1.p 347 RETALSRYKEKKKTRRYEKHIRYESRKVRAESRTRIKGRFAKM 389
                         99***************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.9E-161966IPR000315B-box-type zinc finger
PROSITE profilePS5011910.4091966IPR000315B-box-type zinc finger
PfamPF006431.4E-62064IPR000315B-box-type zinc finger
CDDcd000212.11E-72266No hitNo description
PROSITE profilePS5011910.83662108IPR000315B-box-type zinc finger
PfamPF006431.7E-765107IPR000315B-box-type zinc finger
CDDcd000216.07E-566108No hitNo description
SMARTSM003360.2267108IPR000315B-box-type zinc finger
PROSITE profilePS5101714.753347389IPR010402CCT domain
PfamPF062035.2E-16347389IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MNGSSRNEEA EAPQPEREHQ KRLCDYCGSS MALLYCRADS AKLCFLCDRE VHSANQLFSK  60
HTRSLLCDAC DGSPASIFCT TESSVLCQNC DWESHNLSSS SVHDRRPLEG FSGCPCLNEL  120
LTVVGFENMD KKALLLSDES GGGGGGGDGF LGCGVDGSFD LDDGFSDFLV WDTPSVVSLD  180
DLIVSNPAYK FQAMGVPPLP KNRNAACGRH KEEIFRQLRV LVKSEPNLFS ENVDVKPLKS  240
LASEQNMQRG SLFTGFEHDA EPTVFPAYEA HDFQYNDCGA AEKRESSPKT FIRSYLQECC  300
VVPDKHSYND GSASHANDGH GHGGQMNSEA SSAFPKVAAH ELSSQNRETA LSRYKEKKKT  360
RRYEKHIRYE SRKVRAESRT RIKGRFAKMD H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G253900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007201078.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLM5VM630.0M5VM63_PRUPE; Uncharacterized protein
STRINGEMJ022770.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.17e-82B-box type zinc finger protein with CCT domain