PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G234800.1.p | ||||||||
Common Name | PRUPE_ppa005468mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 461aa MW: 50701.8 Da PI: 8.9182 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.4 | 1.3e-05 | 80 | 102 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Prupe.8G234800.1.p 80 FVCEICNKGFQRDQNLQLHRRGH 102 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.7 | 0.00081 | 157 | 179 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Prupe.8G234800.1.p 157 WKCDKCSKIYAVQSDWKAHSKTC 179 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.21E-6 | 79 | 102 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 79 | 102 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.017 | 80 | 102 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 80 | 102 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 7.2E-5 | 80 | 102 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.1E-4 | 145 | 178 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.21E-6 | 152 | 177 | No hit | No description |
SMART | SM00355 | 180 | 157 | 177 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MFPAMSNSTS LSEEANSLSS DFGPLNPLLL STNISPHQSD HQHQQPTNKI KKKRSLPGNP 60 DPDAEVIALS PKTLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNNKDQIRKR 120 AYVCPEPSCV HHHPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKIYAVQS DWKAHSKTCG 180 TREYRCDCGT LFSRKDSFIT HRAFCDALAE ESAKLSASQL AATTTTNPNI MTPQISLFPF 240 QNPPPPFTTI SLTPWDPPHH QNPNPNLNHH LIKTESHHHN HFPTTQPHKG LLTSPFQNLH 300 LSTHHSSKPS TSSAHLSATA LLQKAATVGS ASSAAASAGQ QAQSAGLTVG EFGTASHMNM 360 ISTDYLGEFT SGDLTTWQKT DRLTRDFLGL TGDGTGNHNV GAVNVVKDML TYAGGVEFHQ 420 QQQQPYDQPL RGHNNSLLLK PQGFGFAETT AAASETWGDC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-35 | 153 | 217 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 2e-35 | 153 | 217 | 3 | 67 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G234800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007201015.1 | 0.0 | protein indeterminate-domain 12 | ||||
Swissprot | O22759 | 1e-133 | IDD12_ARATH; Protein indeterminate-domain 12 | ||||
TrEMBL | M5VM23 | 0.0 | M5VM23_PRUPE; Uncharacterized protein | ||||
STRING | EMJ02214 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02670.1 | 1e-107 | indeterminate(ID)-domain 12 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G234800.1.p |
Entrez Gene | 18766555 |
Publications ? help Back to Top | |||
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