PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G209100.3.p
Common NamePRUPE_ppa004070mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 384aa    MW: 41773.3 Da    PI: 6.1904
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G209100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.92.7e-16326372455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Prupe.8G209100.3.p 326 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 372
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-19320378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.146322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-15325376No hitNo description
Gene3DG3DSA:4.10.280.102.5E-19326376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-14326372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-17328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MNRCVPDFEM EDDYSIPTSS APNRLRKSSL PDDEIMELLW QNGQVVMQSQ NQRPSPNNKK  60
SSQAPSKYAA VLPEDRDIPR PQPHPTPQNH QLFMHEDEMA SWLQYPLVDD PFCADLLYPD  120
SSTVHQTNTN TAAAAELRPN PISAPPSKPP IHPPRRTELQ NFLPFAKTNN NTARVSETAP  180
SSSKSVVRES TTVVDSCDTP LVGHSSRALD SGLDGGGGGG GVTAGAATSF ATVATANAAT  240
SFTGKEIMTC EMSLTSSPGG SSASASVSAE PISSQKPRAG EDRKRKGREA EDDGEFQSED  300
VEFESANGKK QARGSTSTKR SRAAEVHNLS ERRRRDRINE KMKALQELIP RCNKSDKASM  360
LDEAIEYLKS LQLQVQIVTN FCR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1330335ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G209100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894260.0KP689426.1 Prunus pseudocerasus isolate Unigene11686 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007201708.10.0transcription factor PIF1 isoform X1
TrEMBLA0A251N0Z50.0A0A251N0Z5_PRUPE; Uncharacterized protein
STRINGEMJ029070.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.33e-67phytochrome interacting factor 3-like 5