PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G207700.5.p | ||||||||
Common Name | PRUPE_ppa001608mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 794aa MW: 88252.5 Da PI: 6.2253 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.5 | 6.9e-20 | 648 | 744 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++ +W+++++y ++ks++y+l+ ++ +Fv+angL+egDf+v++ ++ Prupe.8G207700.5.p 648 QKVLKQSDVGSLGRIVLPKKEAETHlpELEARDGISIPMEDiGTSHVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--SD 735 79*************************999999********7777*********777777777777.********************..55 PP .SEE..EEE CS B3 88 .sefelvvk 95 ++ +++++ Prupe.8G207700.5.p 736 vKCNKYMIR 744 588877766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.4E-28 | 640 | 749 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 2.08E-34 | 645 | 746 | No hit | No description |
SuperFamily | SSF101936 | 1.16E-22 | 646 | 742 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.207 | 647 | 749 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.5E-20 | 647 | 749 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-16 | 648 | 743 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 794 aa Download sequence Send to blast |
MKGKQVQVHH HQDLHAGDLH HHHMKDANIP ISDGFGGGGA MEELEDQEDN LGVDPSEMWL 60 DDNDQETALL ADVNDPSIFY NDHFPPLPDF PCMSSSSSSS STPAPVKSAT SSSTSSSVSS 120 SSSAASWAIL RSDAEEDGER RHHHNSYNHL HQYSQGDDQA VDAHALSSTA SMEISQPSDL 180 SREGGAMDCM GAMETFGYMD LFESNEFFDP SSIFQSDSLL MEQFQQDDDH QQLLAPHQLQ 240 DPNEATAIIP QQQQEQEVAV RDEENNKEDD QNENKEPDDM AMVFLEWLRS NRETVSAEDL 300 RSVKIKKSTI ECAARRLGGG KEAMKQLLKL VLEWVQTNHL QKRRSNSLTT KDADIVAQDP 360 FQNPNPNTSP RVLESNPSCS FTQTPWMAPP PHAAYDQAGG ILVPTPPPAA YPSMMGYIAP 420 DQYVNGPGPY QPSPEYHHMI DSGQPTWPSS PFGMGTAHYG SFPDNNIHLA PPPQHHPQAF 480 AGYGSQYQPY QYFPLNGEHQ LMRLGSSATK EARKKRMARQ RRLVSHHRHG HQQQQHLNAQ 540 MPDHLLHQQH TRLVGNAADL NCTNTVPLQA NPGNWFYWPT ATAAPSQSPA MMPSITQEAA 600 PPPPLQQMDR PASTQAQNYN QGRSSAAQER QERRQGWKSE KNLKFLLQKV LKQSDVGSLG 660 RIVLPKKEAE THLPELEARD GISIPMEDIG TSHVWNMRYR YWPNNKSRMY LLENTGDFVR 720 ANGLQEGDFI VIYSDVKCNK YMIRGVKVRH AGAKSEGNKR PGKSQRNQHA STPAGTNGSS 780 PSSASASATH KKQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 3e-39 | 643 | 747 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 3e-39 | 643 | 747 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G207700.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF411073 | 0.0 | AF411073.1 Prunus avium viviparous protein (vp1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007200956.1 | 0.0 | B3 domain-containing transcription factor ABI3 isoform X2 | ||||
TrEMBL | M5W5U1 | 0.0 | M5W5U1_PRUPE; Uncharacterized protein | ||||
STRING | EMJ02155 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 1e-145 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G207700.5.p |
Entrez Gene | 18767963 |