PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G207700.1.p
Common NamePRUPE_ppa001608mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 796aa    MW: 88486.7 Da    PI: 6.2253
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G207700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.84.6e-19648746295
                         EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ + +ed  ++ +W++++++    ++ks++y+l+ ++ +Fv+angL+egDf+v++  
  Prupe.8G207700.1.p 648 QKVLKQSDVGSLGRIVLPKKEAETHlpELEARDGISIPMEDiGTSHVWNMRYSFrywpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY-- 735
                         79*************************999999********7777*******8888988888888887.********************.. PP

                         SS.SEE..EEE CS
                  B3  86 gr.sefelvvk 95 
                         ++ ++ +++++
  Prupe.8G207700.1.p 736 SDvKCNKYMIR 746
                         55588877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-26640751IPR015300DNA-binding pseudobarrel domain
CDDcd100151.23E-32645748No hitNo description
SuperFamilySSF1019362.62E-21646744IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.8E-16647751IPR003340B3 DNA binding domain
PROSITE profilePS508639.742647751IPR003340B3 DNA binding domain
PfamPF023622.0E-15648745IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MKGKQVQVHH HQDLHAGDLH HHHMKDANIP ISDGFGGGGA MEELEDQEDN LGVDPSEMWL  60
DDNDQETALL ADVNDPSIFY NDHFPPLPDF PCMSSSSSSS STPAPVKSAT SSSTSSSVSS  120
SSSAASWAIL RSDAEEDGER RHHHNSYNHL HQYSQGDDQA VDAHALSSTA SMEISQPSDL  180
SREGGAMDCM GAMETFGYMD LFESNEFFDP SSIFQSDSLL MEQFQQDDDH QQLLAPHQLQ  240
DPNEATAIIP QQQQEQEVAV RDEENNKEDD QNENKEPDDM AMVFLEWLRS NRETVSAEDL  300
RSVKIKKSTI ECAARRLGGG KEAMKQLLKL VLEWVQTNHL QKRRSNSLTT KDADIVAQDP  360
FQNPNPNTSP RVLESNPSCS FTQTPWMAPP PHAAYDQAGG ILVPTPPPAA YPSMMGYIAP  420
DQYVNGPGPY QPSPEYHHMI DSGQPTWPSS PFGMGTAHYG SFPDNNIHLA PPPQHHPQAF  480
AGYGSQYQPY QYFPLNGEHQ LMRLGSSATK EARKKRMARQ RRLVSHHRHG HQQQQHLNAQ  540
MPDHLLHQQH TRLVGNAADL NCTNTVPLQA NPGNWFYWPT ATAAPSQSPA MMPSITQEAA  600
PPPPLQQMDR PASTQAQNYN QGRSSAAQER QERRQGWKSE KNLKFLLQKV LKQSDVGSLG  660
RIVLPKKEAE THLPELEARD GISIPMEDIG TSHVWNMRYS FRYWPNNKSR MYLLENTGDF  720
VRANGLQEGD FIVIYSDVKC NKYMIRGVKV RHAGAKSEGN KRPGKSQRNQ HASTPAGTNG  780
SSPSSASASA THKKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-376437491105B3 domain-containing transcription factor FUS3
6j9b_D1e-376437491105B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G207700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4110730.0AF411073.1 Prunus avium viviparous protein (vp1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020425365.10.0B3 domain-containing transcription factor ABI3 isoform X1
TrEMBLA0A251N0Z70.0A0A251N0Z7_PRUPE; Uncharacterized protein
STRINGEMJ021550.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94483037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-143B3 family protein