PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G193900.2.p | ||||||||
Common Name | PRUPE_ppa003350mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 574aa MW: 62274.1 Da PI: 6.4375 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28 | 3.9e-09 | 397 | 444 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Prupe.8G193900.2.p 397 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 444 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.33E-17 | 391 | 462 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.81E-10 | 391 | 448 | No hit | No description |
PROSITE profile | PS50888 | 15.663 | 393 | 443 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-16 | 393 | 461 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-6 | 397 | 444 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-10 | 399 | 449 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 574 aa Download sequence Send to blast |
MENEFFLNAG IPPPLHFEQT SSMPAWRSSF STAMDIQATA TADRNCSSEQ SPDCFYNPNW 60 DKSADQNIHF ESALSSMVSS PAASNSNISN ESFVIRELIG KLGNIGSSGE ISPHSQSLLG 120 IQANTYMGRN GNGNGNASTN TSCYSTPLNS PPKLSLPIMD HHLKKEKLPN MGKPMPLNSS 180 VAEFSADPGF AERAAKFSCF GSRSFNGRTT QLGMNNNSSS NNNTELPYRS NAIMGNGKLP 240 RVSSSPALKA LGSQTGLQEK MNSLLQDRNE LPISREESTL SEQNPNGETG LVASNSMDLN 300 SRKRKSVSKG KAKEPPPISS PSPIATKGAE LNDNSNAKRS KPNENNGNDQ NGSVKAEEDT 360 KGSTSSDEKQ TKTGAKPPEP PKDYIHVRAR RGQATDSHSL AERVRREKIS ERMKLLQDLV 420 PGCNKVTGKA LMLDEIINYV QSLQRQVEFL SMKLASVNTR LDFNMDALMS KEIFQQNNSL 480 PQHPIFPLDS SAQAIYGHQR QQNPALQNNI SNGAVDPLDT SLCQSLGMQL PPLSGFSSEG 540 IPQFPAFGED DLQTIVQMGY GQNPNRETEL DGE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 300 | 305 | SRKRKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G193900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007201182.1 | 0.0 | transcription factor bHLH62 | ||||
TrEMBL | A0A251N087 | 0.0 | A0A251N087_PRUPE; Uncharacterized protein | ||||
STRING | EMJ02381 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 1e-111 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G193900.2.p |
Entrez Gene | 18768534 |