PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G188600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 296aa MW: 34139 Da PI: 6.6862 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81.8 | 1.2e-25 | 120 | 210 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y+++ GF+vr++++++s++n+ ++ ++fvCs+eg+r+++ +++ + ++tr gC a+l+v +++ +kw+vtk+++eHnH+l+ Prupe.8G188600.1.p 120 DFYIAYGRHSGFTVRIHHNRRSRMNNMVIGQDFVCSREGFRDKKYVCrEDRVLPPPPVTREGCAAMLRVALRDGEKWVVTKFVKEHNHTLM 210 6*****************************************998772333344899*******************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.6E-23 | 120 | 210 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MKVVKIEFWC FSPANLLRIL CQSCCDECRG CVNCSVVQGT MESKANNISF DSDESERCLE 60 FESCDEHLLI DDDKLPKDID LCSLEVDKII QQPNASLPLM GNAVEPYIGM GFKSRDDARD 120 FYIAYGRHSG FTVRIHHNRR SRMNNMVIGQ DFVCSREGFR DKKYVCREDR VLPPPPVTRE 180 GCAAMLRVAL RDGEKWVVTK FVKEHNHTLM APSKVPWRGF GKNLISEDEK DQKIRDLTIE 240 LSNERQRCKR RCAAYQEQIS MLLKDIQEHS DHLSTRVQDI VRNIRELENE RCVDS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 244 | 249 | RQRCKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G188600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007199070.2 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A251N035 | 0.0 | A0A251N035_PRUPE; Uncharacterized protein | ||||
STRING | EMJ00269 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8861 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 2e-41 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G188600.1.p |