PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G188500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 204aa MW: 23386.6 Da PI: 5.2262 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.9 | 6.2e-27 | 36 | 124 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+eYA++vGF +r+++ ++s+ +++i +r++ C+k+g+ + +++ + rr+r++tr gCka++ vk +k+gkw+vt+++++H+H+l Prupe.8G188500.1.p 36 DFYSEYARHVGFIMRIDQCRRSDVDKRILSRRLSCNKQGRYVKPRDQVRPVRRPRPSTREGCKAMMLVKVNKSGKWVVTRVVKDHTHPL 124 6***************************************999999999**************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-24 | 36 | 125 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MNVAAGAPET SAERDLNAVA EPYVGMEFDS EDAAKDFYSE YARHVGFIMR IDQCRRSDVD 60 KRILSRRLSC NKQGRYVKPR DQVRPVRRPR PSTREGCKAM MLVKVNKSGK WVVTRVVKDH 120 THPLIVSSGI SMDERDMKIE QLTMELERED QLCELYHGLL LTLLDNVEEQ TELISMKVSG 180 VVNDVREFET EVERLPQNEL DDN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G188500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007199499.2 | 1e-145 | protein FAR1-RELATED SEQUENCE 1 | ||||
TrEMBL | A0A251N012 | 1e-148 | A0A251N012_PRUPE; Uncharacterized protein | ||||
STRING | XP_008235883.1 | 1e-143 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 4e-50 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G188500.1.p |