PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G188400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 208aa MW: 23541.8 Da PI: 8.4586 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.4 | 1.9e-26 | 42 | 131 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k+Y +YA++vGF vr+ + ++s +g++ r++ C+k+g++ ++k k e+++r++ r gC+a++ vk+ek+gkw+vt+++++HnH+l+ Prupe.8G188400.1.p 42 KYYTDYARQVGFVVRVMQRRRSGIDGRTLARRLGCNKQGFSPNQKGKFGPEKKPRPSAREGCNATILVKMEKSGKWVVTRFVKDHNHPLV 131 69*********************************************9****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-24 | 42 | 131 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MDLEREAGAV DESVEMAIVA SEGPIPEPYV GMEFDSEDAA RKYYTDYARQ VGFVVRVMQR 60 RRSGIDGRTL ARRLGCNKQG FSPNQKGKFG PEKKPRPSAR EGCNATILVK MEKSGKWVVT 120 RFVKDHNHPL VVTASGFSTA GDKDRKIEEL MMELERQDQL CAGYREKLLS FMNNVEAETE 180 ELSEKIQVIV DNVRKVESEV QKHSRRR* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G188400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007201578.2 | 1e-153 | protein FAR1-RELATED SEQUENCE 5 | ||||
Swissprot | Q9SZL8 | 4e-23 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A251N001 | 1e-152 | A0A251N001_PRUPE; Uncharacterized protein | ||||
STRING | XP_008235882.1 | 1e-151 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 1e-74 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G188400.1.p |
Publications ? help Back to Top | |||
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