PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G188300.1.p | ||||||||
Common Name | PRUPE_ppa011264mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 218aa MW: 25017.4 Da PI: 9.6263 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 97 | 2.2e-30 | 48 | 135 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+++ k+ +++r++ra tr gCka+++vkkek+gkw vt++++eHnH+l+ Prupe.8G188300.1.p 48 FYDAYATHLGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKTRPKR-SENRKPRAITREGCKAMIVVKKEKSGKWIVTRFVKEHNHPLV 135 9*******************************************99.9***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-28 | 48 | 135 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MDEQSSMSKD EDVIESSNGK DAVTSEGNSD MEPYVGMEFE SEEAAKVFYD AYATHLGFIM 60 RVDAFRRSMR DGKVVWRRLV CNKEGFRKTR PKRSENRKPR AITREGCKAM IVVKKEKSGK 120 WIVTRFVKEH NHPLVVTPAN GRRTVLLSQT PDEKDVKIRE LTAELQRERK RSAAYQEQLD 180 MVLREMEEHS NHLSRNIDGI VQSVKEIESK RVAPSNS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G188300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007200455.1 | 1e-161 | protein FAR1-RELATED SEQUENCE 7 | ||||
Swissprot | Q9SZL8 | 5e-31 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | M5VKI9 | 1e-159 | M5VKI9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ01654 | 1e-160 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-98 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G188300.1.p |
Entrez Gene | 18767319 |
Publications ? help Back to Top | |||
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