PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G182700.1.p | ||||||||
Common Name | PRUPE_ppa001597mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 796aa MW: 90549.3 Da PI: 6.769 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 101.6 | 7.7e-32 | 90 | 181 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v+ +++eHnHel+ Prupe.8G182700.1.p 90 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVKEHNHELV 180 9***************************************998888545677889***********************************8 PP FAR1 91 p 91 p Prupe.8G182700.1.p 181 P 181 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.4E-30 | 90 | 181 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.9E-33 | 302 | 394 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 5.0E-12 | 570 | 616 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 11.338 | 582 | 618 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.2E-9 | 593 | 620 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 796 aa Download sequence Send to blast |
MDNEVIEFDI GLGGGGGRDG DDDFVDIEHP VDDEEMVDSP LMSSATGSAS GIVVFGGGGS 60 GEIYLPEGDL LDLEPYEGME FESEEAAKAF YNSYARRVGF STRVSSSRRS RRDGAIIQRQ 120 FVCAKEGFRN LNEKRTKDRE IKRPRTITRV GCKASLSVKM QDSGKWVVSG FVKEHNHELV 180 PPDQVHCLRS HRQISGPAKT LIDTLQAAGM GPRRIMSALI KEYGGISKVG FTEVDCRNYM 240 RNNRQRSLDG DIQMLLDYLR QMQADNQNFF YAVQGDEDQS TGNVIWADPK ARMNYSYFGD 300 TVTFDTTYRS NRYRLPFAPF TGVNHHGQPV LFGCAFLINE SEASFVWLFK TWLMAMSGRH 360 PVSITTDHDA VIQSAIMQVF PQTRHRFCKW HIFKKCQEKL SHVFLKHPTF EADFHKCVNL 420 TESIDEFESC WLSLVDRYDL RDHEWLQTVY SARRQWVPVY LRDTFFAEMS ITQRSDSMNS 480 YFDGYVNAST NLSQFFKLYE KALESRNEKE VKADFETMNT APVLKTPSPM EKQASELYTK 540 KIFMRFQEEL VGTLTFTASK GDDDGEIITY QVAKFGEDHK AYYVKLNVLE MMATCSCQMF 600 EFSGLLCRHV LAVFRVTNVL TLPSHYILKR WTRNAKSSVM LEERSSDVYT NYLESHTVRY 660 NTLRHEAFKF VDGAKSSETY DIALDALKEA AKKVAHAPKN DGKTMVNGHV RGNLAGGASR 720 IHYASGDHEG SSGQHLSEDD MDKKIRELTN ELQCANRKCE VYRANLLSVL KDIEDHKLQL 780 SIKVQNIKIG MKDGL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.20672 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G182700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020425464.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
Swissprot | Q9SZL8 | 0.0 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | M5VLX0 | 0.0 | M5VLX0_PRUPE; Uncharacterized protein | ||||
STRING | EMJ02154 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 0.0 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G182700.1.p |
Entrez Gene | 18768337 |
Publications ? help Back to Top | |||
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